Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_H01
         (427 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    26   0.15 
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   1.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   2.5  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   2.5  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   3.3  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 26.2 bits (55), Expect = 0.15
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +2

Query: 239  GILRTSLGPRGLDKLMVSSDGEVTVTNDGSDNSQDDGRRASDWKASGTASRQSQ 400
            G L   L   G +  +V  DG   +T+ GSD+   +G     W A GT S+Q Q
Sbjct: 1045 GQLYLDLEVEGFETKLVLEDG---ITSSGSDSGSSNG----SWTA-GTVSQQKQ 1090


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 217 PSRATNRRYPPHVPWSEGSR 276
           P +  NR Y   VP+S G R
Sbjct: 467 PEKTANRHYYAFVPFSAGPR 486


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 5/20 (25%), Positives = 13/20 (65%)
 Frame = +1

Query: 364 LESFWYSFPPESGLMRSVMG 423
           +++ WY +PP + +   ++G
Sbjct: 37  IDANWYQYPPLNPMWHGILG 56


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 5/20 (25%), Positives = 13/20 (65%)
 Frame = +1

Query: 364 LESFWYSFPPESGLMRSVMG 423
           +++ WY +PP + +   ++G
Sbjct: 3   IDANWYQYPPLNPMWHGILG 22


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -1

Query: 421 PSPISSILTLAGSCTRSFPI*CSTSIILRIVASVICHSH 305
           PSP  S    +GS   + P   +TS +   V++   H H
Sbjct: 62  PSPTGSSPQHSGSSASTSPAARTTSSMYPYVSAAAAHHH 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,998
Number of Sequences: 438
Number of extensions: 2815
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)