Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_G24
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce...    26   3.4  
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   3.4  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    26   4.5  
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    25   6.0  
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    25   6.0  
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    25   7.9  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    25   7.9  

>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
 Frame = -1

Query: 399 HYQPYCAVQNHFVETNALDLYRYIHLLLSC-GVEMFL-----AKYLPYVFFLGITYHPRD 238
           HYQ +  +   F+  N+ ++++ + ++     VE  L     A +  Y+F LG+   P  
Sbjct: 48  HYQYWRILLWQFIYWNSTEVFQALFIIYQARDVERLLGSHRFASFCVYMFILGMFVTPIF 107

Query: 237 TWYLDALLYKLPPIQPQLVIYHFSI 163
           ++    L   L  IQP      F+I
Sbjct: 108 SFLYSLLFKNLDYIQPGPTFLIFAI 132


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 342 NPVHLFPQNDFGLHNMAGNVWEWTEDIWSDKNVRI 446
           NP H     +F  H  A N W   E I++++ ++I
Sbjct: 275 NPTHHSCVLEFTSHEAANNAWSSPEPIFNNRFIKI 309


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
            Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 76   IHMGQIRIYPNYKIILLHIFH 138
            + + Q+++YP  KI+ +H FH
Sbjct: 991  VPLDQLQLYPEEKIVQVHHFH 1011


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 378 LHNMAGNVWEWTEDIWSDKNVR 443
           L +  GN  +W  D WSD  +R
Sbjct: 175 LTSKLGNTGDWIYDTWSDNELR 196


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -2

Query: 419 ILSPLPNITSHIVQSKIILWKQMH 348
           I  P+P++T +I + +I + +Q+H
Sbjct: 339 ITHPIPDLTGYITEGQIFVDRQLH 362


>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 454 ILIILTFLSDHISSVHSQTLPAILCSPKS 368
           +LI   F+  HI+  H   L ++ C P+S
Sbjct: 78  LLIFALFVGKHIACFHHLLLSSLPCLPRS 106


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 309 GVEMFLAKYLPYVFFLGITYHPRDTWYLDALLYKLPPI 196
           G  M + +   + +F+G+ YHP    YL   L   PPI
Sbjct: 512 GERMEIIEKRDHPYFVGVQYHPE---YLSKPLKPSPPI 546


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,973,037
Number of Sequences: 5004
Number of extensions: 72499
Number of successful extensions: 234
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)