Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_G22
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            29   0.44 
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   0.76 
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    28   0.76 
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    27   1.0  
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    27   1.8  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.1  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   4.1  
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce...    25   4.1  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   7.1  
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    24   9.4  
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    24   9.4  

>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 28.7 bits (61), Expect = 0.44
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 160 LPAVLPDACVRCTDADKPHAIGDVYQLKVPNKQADI 267
           +  V  D C+R  D+ +P  I  +YQ  +P + AD+
Sbjct: 77  MATVSEDKCLRLWDSTQPDKIELLYQKNIPKRCADL 112


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 27.9 bits (59), Expect = 0.76
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -2

Query: 197 VQRTQASGSTAGSSPVRASAAYPLARSQAWCKSLAASVPDTAWMHACL 54
           V+R + SGS+ G S    SA    A S     SLA + P+ A    C+
Sbjct: 123 VRRLRTSGSSTGLSNAPPSANVSKASSNLSLASLAKTQPERATPEVCV 170


>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 286

 Score = 27.9 bits (59), Expect = 0.76
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 262 DIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYL 390
           DIV  F      ++  K  +   +T+LVD   SK +T+I  YL
Sbjct: 228 DIVFGFWNNIIEKRFSKSFIDSYLTRLVDIAISKNVTEIMYYL 270


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 22/110 (20%), Positives = 47/110 (42%)
 Frame = +1

Query: 67   IHAVSGTDAAKDLHQACDLARGYAALALTGLLPAVLPDACVRCTDADKPHAIGDVYQLKV 246
            +  +   D A+D  +  +    ++ LA   L    +PDA      AD P    +V +L  
Sbjct: 1082 VEDIVSLDRAQDYAETVEQPEVWSRLAKAQLDGIRIPDAIESYLKADDPSNYSEVIELAS 1141

Query: 247  PNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYLAG 396
               + + ++ +     ++    D+   L   L+   K+ Q+T+++ +L G
Sbjct: 1142 RAGKYEELIKYLLMARSKMHEPDVDSAL---LIAYAKTNQLTEMETFLIG 1188


>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
 Frame = -2

Query: 350 LSTNCVISGITRXXXXXXXXXXXSKETTISACLFGT---LS**TSPMA*GL-SASVQRTQ 183
           ++TN V + I++           S  TT S+    +   +S  +S M+    SAS     
Sbjct: 413 INTNIVQATISQSSTSGSSSGSSSASTTASSSSVSSGSSISSGSSSMSTSYTSASGSSAH 472

Query: 182 ASGSTAGSSPVRASAA-YPLARSQAWCKSLAAS 87
           +SGS++GSS   +SA+ + L+R   +   LA S
Sbjct: 473 SSGSSSGSSSATSSASTFNLSRFYVFAGILAIS 505


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 209 LSASVQRTQASGSTAGSSPVRASAAYPLARSQAWCKSLAASV 84
           L  S +R  +   ++   PVR S A    R  +W + LAA++
Sbjct: 627 LPNSKKRFSSFSGSSSKLPVRPSTALTDKRKPSWSRRLAAAI 668


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 249 WHFELINVSDGVRLVRVGAAHASVRQ 172
           W  +LIN++DG+  +++   H+   Q
Sbjct: 798 WSGDLINIADGIHEIKLQRVHSQDHQ 823


>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 176 GSTAGSSPVRASAAYPLARSQAWCKSLAASVPDTA 72
           GS   + PV+ S  YP+A  Q    S+  +V DT+
Sbjct: 285 GSHNSAKPVQRSHTYPVAVPQNTSDSVGNAVTDTS 319


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +1

Query: 304  SYKDLVMPLITQLVDNLKSKQITDIKIYLAGHTSKYP 414
            S+K +V PL TQL  ++ +  ITD++   +  T+ +P
Sbjct: 1204 SFKRVVTPLGTQLRKDILNDSITDME-NTSSFTASFP 1239


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 127 RGYAALALTGLLPAVLPDACVRCTDADKPHAIGDVYQLKVPNKQADIV 270
           RG+  +AL  ++ A++  A  R    + P  +GD+  L V  +  DIV
Sbjct: 455 RGWLLVALLEIIHALMLAAFCRDKGFEVPSDLGDI-TLYVQERMVDIV 501


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 68  MHACLNGVISNNRLIGRS 15
           ++ C+N ++S N L+G S
Sbjct: 265 LYECINTIVSGNMLVGHS 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,711,423
Number of Sequences: 5004
Number of extensions: 30074
Number of successful extensions: 94
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)