Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_G22
(450 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1361 - 25998873-25999223,25999311-25999461,25999546-259997... 32 0.24
10_08_0824 + 20821724-20822137,20822457-20822543,20822729-208228... 31 0.43
08_02_1557 + 27867977-27869134 29 1.7
07_03_1251 + 25186333-25188027,25188113-25188208,25188292-251883... 29 1.7
08_01_0303 + 2493388-2493954 28 4.0
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432... 28 4.0
01_06_0240 + 27794741-27795466 28 4.0
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815... 28 4.0
12_01_0725 + 6428572-6428817 27 5.3
11_05_0096 - 19029632-19029937,19030376-19031197 27 5.3
06_02_0238 - 13357877-13357954,13358186-13358302,13358537-133586... 27 5.3
02_05_0587 + 30162806-30163183,30163315-30163478,30163571-301636... 27 5.3
05_03_0475 + 14486969-14487140,14487215-14487338,14487424-144875... 27 7.0
01_06_0004 + 25507739-25508206,25509346-25509477,25509910-255100... 27 7.0
12_01_0591 - 4835894-4836328,4836343-4837882,4838911-4839050,484... 27 9.2
12_01_0221 + 1671231-1671349,1671613-1671745,1672011-1672190,167... 27 9.2
08_02_1380 - 26547273-26547409,26548038-26548097,26549347-26549689 27 9.2
03_06_0230 - 32518749-32519143,32519301-32519589 27 9.2
>07_03_1361 -
25998873-25999223,25999311-25999461,25999546-25999783,
25999898-26000108,26000210-26000340,26000909-26001037,
26001329-26002130
Length = 670
Score = 31.9 bits (69), Expect = 0.24
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Frame = -2
Query: 209 LSASVQRTQASGSTAGSSPVRASAAYPLARSQAWCK------SLAASVPDT-AWMHACLN 51
L+A+ T A+ G+ + YP+ S AWC A + DT A MHA N
Sbjct: 165 LNATADYTAAAARRFGTGEISFDPTYPVIYSMAWCTPDMAPGRCRACLADTIAQMHAYFN 224
Query: 50 GVISNNRLIG 21
RL+G
Sbjct: 225 PNAQGARLVG 234
>10_08_0824 +
20821724-20822137,20822457-20822543,20822729-20822829,
20822917-20822967,20823616-20823790,20823878-20824192,
20824504-20824707,20824799-20825314,20825400-20825609,
20826092-20826280,20827254-20827405,20827685-20827837,
20827925-20828006,20828086-20828475
Length = 1012
Score = 31.1 bits (67), Expect = 0.43
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 277 FETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYL-AGHTSKYPYPILYD 432
FET + E S D L+T+++DNL + + Y + TS Y YP L D
Sbjct: 540 FETKAALENSSSDDDSQLLTRIIDNLVDESHESNQTYSDSNDTSLYNYPSLSD 592
>08_02_1557 + 27867977-27869134
Length = 385
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 152 VRASAAYPLARSQAWCKSLAASVP 81
V AS+AYP Q+ CKS AAS P
Sbjct: 218 VAASSAYPYRARQSSCKSSAASSP 241
>07_03_1251 +
25186333-25188027,25188113-25188208,25188292-25188381,
25188473-25188577,25188764-25188823,25188931-25188993,
25189077-25189172,25189982-25190146,25191104-25191277,
25191387-25191452,25191556-25191654,25192714-25192857,
25193312-25193401
Length = 980
Score = 29.1 bits (62), Expect = 1.7
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -2
Query: 167 AGSSPVRASAAYPLARSQA--WCKSLAASVPDTAWMHACLNGVISN 36
A SP A+AA P R++A +C P ++ +H CL G+ S+
Sbjct: 11 ASDSPA-AAAASPAVRAEALAYCARARDETPPSSLLHLCLYGLASS 55
>08_01_0303 + 2493388-2493954
Length = 188
Score = 27.9 bits (59), Expect = 4.0
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 64 CIHAVSGTDAAKDLHQACDLARGYAALALTGLLPAVLPDACVRC 195
C HA+S AA +LH+ C R + L T L A VRC
Sbjct: 15 CHHAISRRSAAVELHR-CSRRRRPSPLTTTVALTRRRSPAAVRC 57
>02_05_0232 + 27041793-27042087,27042822-27042943,27043098-27043219,
27043601-27043705,27043828-27044257,27044356-27044517,
27044565-27045260,27045349-27046128,27046441-27046654,
27047621-27047981,27047993-27048140,27048276-27048419,
27048784-27048888,27049749-27049794,27050089-27050255,
27050338-27050490,27050654-27050950,27051053-27051220,
27051298-27051363,27051451-27051927,27052031-27052768,
27052935-27053120
Length = 1993
Score = 27.9 bits (59), Expect = 4.0
Identities = 20/95 (21%), Positives = 45/95 (47%)
Frame = +1
Query: 25 ISLLLDITPFRQACIHAVSGTDAAKDLHQACDLARGYAALALTGLLPAVLPDACVRCTDA 204
++ ++D T +++ +H+ +D+ ACD + L + +L +AC R +
Sbjct: 1267 LAAIVDDTNKQRSVMHSPQESDSVNFSSPACDPQQEEEEPNLDEDMHDILNEACTRA-EL 1325
Query: 205 DKPHAIGDVYQLKVPNKQADIVVSFETTQSNEQSY 309
K G+ K + D++++ + Q +E+SY
Sbjct: 1326 LKKEVDGE--SSKRRKAEMDLLIALQRVQESEKSY 1358
>01_06_0240 + 27794741-27795466
Length = 241
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 160 LPAVLPDACVRCTDADKPHAIGDV 231
+PA P A VRCT A KP A G +
Sbjct: 24 IPAATPSAIVRCTAAPKP-ATGSI 46
>01_06_0213 +
27580635-27581105,27581206-27581298,27581376-27581540,
27581640-27581862,27582329-27582429,27582666-27582713,
27583086-27583172,27583745-27583879,27583985-27584140,
27585336-27585545,27585641-27586351,27586429-27586974,
27587872-27588495,27588595-27588699,27590460-27590711,
27590939-27591766
Length = 1584
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 182 ASGSTAGSSPVRASAAY-PLARSQAWCKSLAASVPDTAWMHACLNG 48
+S +T+ SPVRAS+ Y + + A K + S +W+H G
Sbjct: 723 SSANTSSDSPVRASSEYHEVPPTDAEDKEIDESNQGESWVHGLAEG 768
>12_01_0725 + 6428572-6428817
Length = 81
Score = 27.5 bits (58), Expect = 5.3
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -1
Query: 216 VRLVRVGAAHA--SVRQHSRQQSREGQRRVSSRQVTGLVQVLSGVCSGHRVDARLSEWC 46
+ ++ GAA +V H+ RR + + +V+ SG CSGHR +A ++ WC
Sbjct: 16 ITMIACGAARKKDAVYVHAVTTPPSQNRRALQVRPSPVVEP-SGCCSGHRSEA-VASWC 72
>11_05_0096 - 19029632-19029937,19030376-19031197
Length = 375
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 97 KDLHQACDLARGYAALALTGLLPAVLPDACVRCTDADKPHAIGD 228
+ L D+ G+ A+A + A PD ++CT D PH + D
Sbjct: 206 RGLRSLVDVGGGHGAVAKA--IAAAFPD--IKCTVMDLPHVVAD 245
>06_02_0238 -
13357877-13357954,13358186-13358302,13358537-13358641,
13359301-13359393,13359801-13359888,13359979-13360028,
13361147-13361205,13361297-13361516,13361611-13361691,
13364034-13364111,13364203-13364298,13364370-13364435
Length = 376
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +1
Query: 37 LDITPFRQACIHAVSGTDAAKDL 105
LDIT RQ +H VSGTD KD+
Sbjct: 168 LDIT--RQFLLHIVSGTDVEKDV 188
>02_05_0587 +
30162806-30163183,30163315-30163478,30163571-30163654,
30163737-30163794,30164092-30164145,30164244-30164309,
30164310-30164381,30164547-30164627,30165361-30165533,
30165916-30166018,30166148-30166279,30166432-30166554,
30166898-30167002,30167397-30167722,30167919-30168258,
30169973-30170113,30170589-30170801,30170901-30171119,
30171272-30171619,30171711-30172043,30172548-30172601
Length = 1188
Score = 27.5 bits (58), Expect = 5.3
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = -2
Query: 158 SPVRASAAYPLARSQAWCKSLAASVPDTAWMHACLNGVISNNRLIGRSGEP 6
SPVRASAA A + A ++ AA VP + + L +S R + SG P
Sbjct: 36 SPVRASAASASASAPAQREAAAAGVPWGCEIES-LESAVSLERWLTDSGLP 85
>05_03_0475 +
14486969-14487140,14487215-14487338,14487424-14487559,
14487663-14488997
Length = 588
Score = 27.1 bits (57), Expect = 7.0
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -2
Query: 191 RTQASGSTAGSSP-VRASAAYPLARSQAWCKSLAASVPDTAWMHACLNG 48
R A + A SSP V A A+P +R A L + W+H C +G
Sbjct: 503 RPAADAAAAASSPRVAAGDAFPSSRYDAML--LREDPRNLTWLHGCDDG 549
>01_06_0004 +
25507739-25508206,25509346-25509477,25509910-25510086,
25510175-25510219,25510305-25510512,25510766-25510825,
25510826-25511016,25511219-25511614
Length = 558
Score = 27.1 bits (57), Expect = 7.0
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Frame = +1
Query: 76 VSGTDAAKDLHQACDLARGYAALALTG--LLPAVLPDACVRCTDADKPHAIGDVYQLKVP 249
+ GT K +H AC + + + LTG L P +P R D A G++Y VP
Sbjct: 479 IRGTFTIKPVHFACSDSSPCSGITLTGVQLRPVQIPH--YRLNDPFCWQAFGELYTPTVP 536
Query: 250 NKQADIVVSFETTQSNEQSYKDL 318
+ + +N QSY DL
Sbjct: 537 --PIACLHLGKPAGNNLQSYHDL 557
>12_01_0591 -
4835894-4836328,4836343-4837882,4838911-4839050,
4840051-4840605
Length = 889
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 282 FEGDDNICLLVWHFELINVSDGVR 211
FEGDD IC+L L+ + G+R
Sbjct: 753 FEGDDGICILAKLPSLVQLDLGIR 776
>12_01_0221 +
1671231-1671349,1671613-1671745,1672011-1672190,
1672632-1672712,1672850-1673013,1673109-1673245,
1673492-1673607,1673725-1673958
Length = 387
Score = 26.6 bits (56), Expect = 9.2
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 3 TRLPTSANQSIIRYHTIQTSVHPRGVRNR 89
+ L + +S++RYH + TS G+R R
Sbjct: 197 SNLNCTIKESLVRYHDVVTSAKKHGIRIR 225
>08_02_1380 - 26547273-26547409,26548038-26548097,26549347-26549689
Length = 179
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2
Query: 128 LARSQAWCKSLAASVPDTAWMHAC 57
LA AWC + AA+ PD A C
Sbjct: 9 LAAVVAWCVAAAAAAPDAALQSKC 32
>03_06_0230 - 32518749-32519143,32519301-32519589
Length = 227
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -2
Query: 206 SASVQRTQASGSTAGSSPVRASAAYPLARSQAWCKSLAAS 87
+A+ R S + A SSP SAA AR A + AAS
Sbjct: 25 AAAASRAARSSAVASSSPCARSAAVVAARRAARSAAAAAS 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,660,232
Number of Sequences: 37544
Number of extensions: 220039
Number of successful extensions: 678
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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