Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_G21
(590 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49967-5|CAA90251.1| 293|Caenorhabditis elegans Hypothetical pr... 257 5e-69
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr... 29 2.5
AL132951-9|CAC44304.3| 553|Caenorhabditis elegans Hypothetical ... 29 2.5
Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr... 28 4.3
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 27 7.5
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 27 10.0
AF022969-1|AAB69894.3| 391|Caenorhabditis elegans Hypothetical ... 27 10.0
>Z49967-5|CAA90251.1| 293|Caenorhabditis elegans Hypothetical
protein F54C9.5 protein.
Length = 293
Score = 257 bits (629), Expect = 5e-69
Identities = 118/176 (67%), Positives = 137/176 (77%)
Frame = +3
Query: 57 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 236
MG VKV+KNK YFKRYQVK +RRREGKTDYYARKRL VQDKNKYNTPKYRLIVR++NKDV
Sbjct: 1 MGLVKVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDV 60
Query: 237 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYT 416
Q+AYS+IEGD +V +AYSHELPRYG+KVGLTNYAAAY TG DS Y
Sbjct: 61 VAQLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYK 120
Query: 417 GATEVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHS 584
G E+TG++YNVE + F+ LD+GLARTTTG+++F MKG DGG+NVPHS
Sbjct: 121 GHEELTGEDYNVEE-EGDRAPFKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHS 175
>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical
protein F25C8.3b protein.
Length = 3175
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = +1
Query: 265 RVITLSVL----PTLMNSHAMVSRWV*LTMLLPTALVCC 369
RV+ ++L P+L N+ A VSRW + LP + CC
Sbjct: 77 RVVVQNILHGLSPSLSNALASVSRWKLVRAALPHVIQCC 115
>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical
protein F25C8.3a protein.
Length = 3184
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = +1
Query: 265 RVITLSVL----PTLMNSHAMVSRWV*LTMLLPTALVCC 369
RV+ ++L P+L N+ A VSRW + LP + CC
Sbjct: 77 RVVVQNILHGLSPSLSNALASVSRWKLVRAALPHVIQCC 115
>AL132951-9|CAC44304.3| 553|Caenorhabditis elegans Hypothetical
protein Y67H2A.2a protein.
Length = 553
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +3
Query: 36 ISGIF*KMGFVKVVKNKQYFKRYQVKFKRRREGKTDYY 149
I IF K+G V+ K +Q +R+Q+KF RE +T Y+
Sbjct: 405 IYSIFYKLGKVEE-KERQIIERFQIKF-HEREDRTRYF 440
>Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical
protein K10G4.5 protein.
Length = 1251
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +3
Query: 186 YNTPKYRLIVRLSNKDVTCQVAYSRIEGDHI---VCAAYSHEL 305
YN P+YR +++L K C+ + GD++ +CA + EL
Sbjct: 548 YNDPEYRNVMKLKIKSPICE--QCEVTGDNLPFGICAEHETEL 588
>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical protein
W05B2.2 protein.
Length = 1278
Score = 28.3 bits (60), Expect = 4.3
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = -3
Query: 303 VHESRQHRQCDHPQCVSMQLDR*HLYWITVQSVGTLECCICFYPGQRGV-CEHSSQF 136
VH S +H QC HP LD + +++S E C+ G V C+H F
Sbjct: 1084 VHSSIEHLQCPHPYL--NPLDHPQMCITSLKSCSDSETCLKTTSGGNFVCCQHPPSF 1138
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -2
Query: 562 PSTAPFMAPNTRAPVVVRAKPTSK*HLNAPGPLSTGSTLYSSP--VTSVAPV*RLSKPS 392
PST + P + PT+ P +TG+T +SP +TS AP + PS
Sbjct: 485 PSTQGVPTSTSNQPTPSTSNPTTPKSTVTASPSTTGATSTASPSTITSSAPTSQSHSPS 543
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 568 KPPSTAPFMAPNTRAPVVVRAKPTSK 491
+PP AP TRAP RA P ++
Sbjct: 294 QPPPRGSTAAPGTRAPPATRAPPATR 319
>AF022969-1|AAB69894.3| 391|Caenorhabditis elegans Hypothetical
protein C29G2.5 protein.
Length = 391
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 177 KNKYNTPKYRLIVRLSNKDVTCQVAYSRIEG 269
K+K TP YRL++ L + D+T V S I G
Sbjct: 187 KSKSRTPTYRLMLILGSLDLTGLVISSLIPG 217
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,205,833
Number of Sequences: 27780
Number of extensions: 305713
Number of successful extensions: 802
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -