Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_G20
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...   103   2e-23
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe...   100   3e-22
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...    73   2e-14
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    67   1e-12
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo...    57   2e-09
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    32   0.064
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    27   1.8  
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    25   5.6  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    25   7.3  
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    25   7.3  
SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos...    25   9.7  

>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score =  103 bits (246), Expect = 2e-23
 Identities = 48/104 (46%), Positives = 65/104 (62%)
 Frame = +3

Query: 231 FHRYSEWRLLDASQRGLLLFKLATLMERDAKYLAELETLDNGKPVKQAEQEVLWASGIVR 410
           F   + WR   ++QRG  L +LA  +E++ +YLA +ETLDNGK +  A  +V  A+   R
Sbjct: 73  FQTDAPWRKFSSAQRGRCLSRLADCIEQNLEYLASIETLDNGKSITLARGDVQAAADCFR 132

Query: 411 YYAGKADKILGNTIPADGEVLTFTLKEPVGVCGQILPWNYPIPM 542
           YY G ADK  G TI  D +   +T  EP+GVCGQI+PWN+P  M
Sbjct: 133 YYGGWADKDYGQTIETDIKRFAYTRHEPIGVCGQIIPWNFPFLM 176


>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 99.5 bits (237), Expect = 3e-22
 Identities = 47/102 (46%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
 Frame = +3

Query: 240 YSEWRLLDASQRGLLLFKLATLMERDAKYLAELETLDNGKP-VKQAEQEVLWASGIVRYY 416
           +  W+ +  S++G LL KLA L E+ A  LA +E +D+GKP V  A  +V     ++RY 
Sbjct: 69  FKTWKKVPGSEKGELLMKLAELTEKHADTLAAIEAMDSGKPLVSNARGDVDGTIALLRYC 128

Query: 417 AGKADKILGNTIPADGEVLTFTLKEPVGVCGQILPWNYPIPM 542
           AG ADKI G  IP   E L +  + P+GVCGQI+PWNYP+ M
Sbjct: 129 AGWADKIYGQVIPTGPEKLAYAKRTPIGVCGQIVPWNYPLNM 170


>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score = 73.3 bits (172), Expect = 2e-14
 Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
 Frame = +3

Query: 270 QRGLLLFKLATLMERDAKYLAELETLDNGKPVKQAEQEVLWASGIVRYYAGKADKILGNT 449
           QR  LL + A L+  +   L ++ TL+NGKP+ QAE EV   SG +++YA +A +  G+ 
Sbjct: 78  QRSQLLERWAELIMENKDDLVKMLTLENGKPLSQAEMEVTTCSGYLKWYAAEAVRTFGDV 137

Query: 450 IPADGEVLTF--TLKEPVGVCGQILPWNYPIPM 542
            P+  +   F  ++K+PVGV   I PWN+P  M
Sbjct: 138 APSSLQSQNFLISIKQPVGVSALITPWNFPAAM 170



 Score = 28.3 bits (60), Expect = 0.79
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 91  FINNEWVDAVSKKTFPTINPQDESVIVQVAE 183
           F+  +W+ + + KTF   NP    +I +VA+
Sbjct: 21  FVQGKWISSPNNKTFEVDNPATGEIIGKVAD 51


>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 67.3 bits (157), Expect = 1e-12
 Identities = 35/102 (34%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
 Frame = +3

Query: 240 YSEWRLLDASQRGLLLFKLATLMERDAKYLAELETLDNGKPVKQAEQEVLWASGIVRYYA 419
           +  +R  D  +R  +L +   L+  +A  LA + TL+NGK +  A+ EV++A+  + ++A
Sbjct: 74  FLSYRNSDIKERYAILRRWYDLIMENADDLATMMTLENGKALGDAKGEVVYAAKFIDWFA 133

Query: 420 GKADKILG-NTIPADGEVLTFTLKEPVGVCGQILPWNYPIPM 542
           G+A +I G +++ ++ +    T+K+PVGV G I PWN+P  M
Sbjct: 134 GEALRISGDSSMSSNPQNRIITIKQPVGVVGIITPWNFPAAM 175



 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 91  FINNEWVDAVSKKTFPTINPQDESVIVQVAE 183
           +I  +WV A S KTF   NP     +  V +
Sbjct: 27  YIGGKWVTAASGKTFDVENPGLNETLAPVTD 57


>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 500

 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
 Frame = +3

Query: 249 WRLLDASQRGLLLFKLATLMERDAKYLAELETLDNGKPVKQAEQEVLWASGIVRYYAGKA 428
           W      QRGL+L K+A +M    + LA ++T++ GKP   A  ++   + +  YYA  A
Sbjct: 78  WAKWPGKQRGLVLRKIAKMMREKRELLAGIDTINCGKPTPYALFDIDSCADMFEYYAEVA 137

Query: 429 D---KILGNTIPADGEVLTFTLKEPVGVCGQILPWNYPIPM 542
           +     +   +P +     F  + P GV G I PWN+P+ M
Sbjct: 138 ETDNPTVKVPLPNNPGFCAFEKRFPRGVIGVITPWNFPLKM 178


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 31.9 bits (69), Expect = 0.064
 Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
 Frame = +3

Query: 246 EWRLLDASQRGLLLFKLATLMERDAKYLAELETLDNGKP-VKQAEQEVLWASGIVRYYAG 422
           EW+    ++R   L  L   + R+    AE+   D GK  V  A  E+L     + +   
Sbjct: 40  EWKSTSFAERRNFLKALKENIIRNQDKYAEIACKDTGKTLVDAAFGEILVTLEKINWTLA 99

Query: 423 KADKILGNTIPADGEVLT-----FTLKEPVGVCGQILPWNYPI 536
             ++ L  T      +LT     +   EP+GV   ++ WNYP+
Sbjct: 100 NGEQSLRPT-KRPNSLLTSYKGGYVKYEPLGVIAALVSWNYPL 141


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +3

Query: 279 LLLFKLATLMERDAKYLAELETLDNGKPVKQAEQEVLWASGIVRYYAGKADKILGNTIPA 458
           L+  KL   +    KY ++    D G P+ + + E L  SG+      + +K+L   +  
Sbjct: 531 LIKEKLTVNVPVKPKYSSQETAFDTGAPISEEQIEELLNSGLDEQ---EGEKLLVLHVSE 587

Query: 459 DGEVLTFT--LKEPVGV 503
              V TFT  LK P G+
Sbjct: 588 KDPVGTFTEVLKNPFGL 604


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 363 VKQAEQEVLWASGIVRYYAGKADKILG 443
           VK+ +   +W  G +  YAG+  +ILG
Sbjct: 219 VKKGDTVAIWGMGPIGLYAGRWAQILG 245


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 267 SQRGLLLFKLATLMERDAKYLAE--LETLDNGKPVK 368
           SQ G LLF L +L ERD  + A+   E L+N   V+
Sbjct: 143 SQIGKLLFDLRSLNERDNPFHAQNNAENLENATFVR 178


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 374 CLLHWFSVVQCFEF 333
           CL+HWF +++  EF
Sbjct: 337 CLVHWFQIMRSAEF 350


>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = -3

Query: 526 FHGKIXPQTPTGSFKVNVRTSPSAGI---VFPKILSAFPA*YL 407
           +H +     P  + +VN R  P+AG      P + +A P+ YL
Sbjct: 6   YHPQPTHAIPVSNMRVNTRYEPTAGFSGTSVPSVQAANPSAYL 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,163,417
Number of Sequences: 5004
Number of extensions: 39973
Number of successful extensions: 97
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)