Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_G20
(549 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1105 + 9102059-9102167,9103770-9103907,9104125-9104267,910... 97 8e-21
06_03_0627 + 22903346-22903523,22906010-22906152,22906235-229066... 96 2e-20
02_05_0620 - 30412004-30412429,30412509-30412646,30412729-304128... 89 3e-18
01_05_0544 + 23098921-23098953,23099209-23099272,23099942-231000... 85 3e-17
01_05_0545 + 23109920-23110040,23113363-23113505,23113626-231140... 80 1e-15
02_01_0550 + 4044683-4044784,4044862-4044975,4045277-4045360,404... 75 4e-14
04_04_0154 - 23146445-23146535,23146689-23146795,23146933-231469... 64 7e-11
07_01_0637 + 4767021-4767083,4767175-4767249,4767339-4767500,476... 53 2e-07
08_02_0717 + 20372728-20372836,20372936-20373078,20374131-203742... 47 1e-05
08_02_0811 + 21438848-21439001,21439469-21439662,21439769-214398... 41 6e-04
07_03_0806 + 21654057-21655154,21655728-21655796,21656110-216562... 29 1.8
07_03_1752 - 29218348-29218524,29218593-29218736,29218957-292191... 28 4.3
09_06_0212 + 21606245-21606401,21606505-21606782,21608330-21608551 27 9.9
01_01_0012 + 71903-72935,73468-73981,74619-76008 27 9.9
>06_01_1105 +
9102059-9102167,9103770-9103907,9104125-9104267,
9104362-9104515,9104610-9104839,9105382-9105471,
9105606-9105779,9105873-9106010,9106212-9106349,
9106450-9106511,9106744-9106972,9108531-9109364
Length = 812
Score = 97.1 bits (231), Expect = 8e-21
Identities = 48/100 (48%), Positives = 63/100 (63%), Gaps = 1/100 (1%)
Frame = +3
Query: 249 WRLLDASQRGLLLFKLATLMERDAKYLAELETLDNGKPVKQAEQ-EVLWASGIVRYYAGK 425
W + A +R +L + A L+E+ +A LET DNGKP QA EV + ++RYYAG
Sbjct: 124 WPKMTAYERSRILLRFADLIEKHNDEIAALETWDNGKPYAQAANIEVPMVARLMRYYAGW 183
Query: 426 ADKILGNTIPADGEVLTFTLKEPVGVCGQILPWNYPIPMF 545
ADKI G +PADG L EP+GV GQI+PWN+P+ MF
Sbjct: 184 ADKIHGLVVPADGPHHVQVLHEPIGVAGQIIPWNFPLLMF 223
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +1
Query: 94 INNEWVDAVSKKTFPTINPQDESVIVQVAEGD 189
I+ ++VD+ S KTFPT++P+ +I VAEGD
Sbjct: 73 IDGKFVDSASGKTFPTLDPRTGELIAHVAEGD 104
>06_03_0627 +
22903346-22903523,22906010-22906152,22906235-22906618,
22906980-22907069,22907147-22907320,22907414-22907551,
22907719-22907856,22907958-22908019,22908240-22908513
Length = 526
Score = 95.9 bits (228), Expect = 2e-20
Identities = 47/103 (45%), Positives = 67/103 (65%), Gaps = 1/103 (0%)
Frame = +3
Query: 240 YSEWRLLDASQRGLLLFKLATLMERDAKYLAELETLDNGKPVKQAEQ-EVLWASGIVRYY 416
+ EW + S+RG ++ K A ++ER A LA LE+LD GKP+ A +V GI+RY+
Sbjct: 98 HGEWPRMSGSERGRVMAKYAEVVERHADELAALESLDAGKPLAAARAVDVGECVGILRYF 157
Query: 417 AGKADKILGNTIPADGEVLTFTLKEPVGVCGQILPWNYPIPMF 545
AG ADKI G T+ ++ +TL+EP+GV G I+PWN+P MF
Sbjct: 158 AGAADKIHGETLKMSRQLQGYTLREPLGVAGLIVPWNFPAIMF 200
Score = 41.1 bits (92), Expect = 6e-04
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = +1
Query: 91 FINNEWVDAVSKKTFPTINPQDESVIVQVAEGDR 192
FIN +VDA S KTF T +P+ VI +VAEGD+
Sbjct: 49 FINGRFVDAASGKTFETRDPRTGDVIARVAEGDK 82
>02_05_0620 -
30412004-30412429,30412509-30412646,30412729-30412866,
30412966-30413139,30413211-30413684,30413775-30413917,
30414002-30414160,30414943-30415042
Length = 583
Score = 88.6 bits (210), Expect = 3e-18
Identities = 45/100 (45%), Positives = 61/100 (61%), Gaps = 1/100 (1%)
Frame = +3
Query: 249 WRLLDASQRGLLLFKLATLMERDAKYLAELETLDNGKPVKQAE-QEVLWASGIVRYYAGK 425
W + A +R +L + A L+E+ A +A LET D GK ++Q EV + +RYY G
Sbjct: 128 WPRMTAYERCRVLLRFADLIEQHADEIAALETWDGGKTLEQTTGTEVPMVARYMRYYGGW 187
Query: 426 ADKILGNTIPADGEVLTFTLKEPVGVCGQILPWNYPIPMF 545
ADKI G +PADG L EP+GV GQI+PWN+P+ MF
Sbjct: 188 ADKIHGLVVPADGPHHVQVLHEPIGVAGQIIPWNFPLLMF 227
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = +1
Query: 94 INNEWVDAVSKKTFPTINPQDESVIVQVAEGD 189
IN +VDA S KTF T++P+ VI +VAEGD
Sbjct: 77 INGNFVDAASGKTFATVDPRTGDVIARVAEGD 108
>01_05_0544 +
23098921-23098953,23099209-23099272,23099942-23100084,
23100246-23100719,23100950-23101123,23101230-23101367,
23101489-23101589,23101910-23102183
Length = 466
Score = 85.4 bits (202), Expect = 3e-17
Identities = 42/103 (40%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Frame = +3
Query: 240 YSEWRLLDASQRGLLLFKLATLMERDAKYLAELETLDNGKPVKQAEQ-EVLWASGIVRYY 416
+ W + RG +L K A L+E+ + LA L+T+D GK + ++ + ++RYY
Sbjct: 71 HGPWPRMSGFARGRILHKFADLVEQHVEELAALDTVDAGKLFAMGKLVDIPGGANLLRYY 130
Query: 417 AGKADKILGNTIPADGEVLTFTLKEPVGVCGQILPWNYPIPMF 545
AG ADK+ G T+ +TLKEPVGV G I+PWNYP MF
Sbjct: 131 AGAADKVHGETLKMARPCHGYTLKEPVGVVGHIVPWNYPTTMF 173
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 127 KTFPTINPQDESVIVQVAEGDR 192
KTF T +P+ VI ++AEGD+
Sbjct: 34 KTFETRDPRTGEVIAKIAEGDK 55
>01_05_0545 +
23109920-23110040,23113363-23113505,23113626-23114009,
23114106-23114219,23114310-23114483,23114608-23114745,
23114884-23115021,23115094-23115155,23115268-23115541
Length = 515
Score = 79.8 bits (188), Expect = 1e-15
Identities = 40/103 (38%), Positives = 64/103 (62%), Gaps = 1/103 (0%)
Frame = +3
Query: 240 YSEWRLLDASQRGLLLFKLATLMERDAKYLAELETLDNGKPVKQAEQ-EVLWASGIVRYY 416
+ +W + +R ++ KLA L+E+ A LA L+ D GK + + ++ A+ ++RYY
Sbjct: 79 HGKWPRMSGYERSRVMNKLADLVEQHADELAALDGADAGKLLTLGKIIDMPAAAQMMRYY 138
Query: 417 AGKADKILGNTIPADGEVLTFTLKEPVGVCGQILPWNYPIPMF 545
AG ADKI G ++ G+ +TL+EP+GV G I+PWN+P MF
Sbjct: 139 AGAADKIHGESLRVAGKYQGYTLREPIGVVGVIIPWNFPTMMF 181
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +1
Query: 91 FINNEWVDAVSKKTFPTINPQDESVIVQVAEGDR 192
FIN E+VDA S KTF T +P+ V+ +AE D+
Sbjct: 30 FINGEFVDAASGKTFKTRDPRTGDVLAHIAEADK 63
>02_01_0550 +
4044683-4044784,4044862-4044975,4045277-4045360,
4045818-4045917,4046923-4046971,4047071-4047158,
4047251-4047361,4047771-4047833,4047942-4048052,
4048517-4048582,4048689-4048766,4049553-4049630,
4049784-4049850,4049930-4050015,4050301-4050333,
4050426-4050458,4050754-4050854,4050986-4051071,
4051478-4051584,4051683-4051839,4051854-4051984
Length = 614
Score = 74.9 bits (176), Expect = 4e-14
Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Frame = +3
Query: 240 YSEWRLLDASQRGLLLFKLATLMERDAKYLAELETLDNGKPVKQAEQEVLWASGIVRYYA 419
+ W L A++R L K L+ + LA L TL+ GKP+K+A EV + + + Y+A
Sbjct: 132 FYSWSKLTANERSKALRKWHDLIISHKEELALLMTLEQGKPMKEALVEVTYGASFIEYFA 191
Query: 420 GKADKILGNTIPAD-GEVLTFTLKEPVGVCGQILPWNYPIPM 542
+A +I G+ IP + LK+PVGV G + PWN+P+ M
Sbjct: 192 EEAKRIYGDIIPPTLSDRRLLVLKQPVGVVGAVTPWNFPLAM 233
>04_04_0154 -
23146445-23146535,23146689-23146795,23146933-23146993,
23147070-23147221,23147306-23147383,23147696-23147809,
23147880-23147956,23148128-23148194,23148341-23148406,
23148528-23148651,23148733-23148825,23149446-23149594,
23149681-23149761,23150502-23150644,23150758-23150872
Length = 505
Score = 64.1 bits (149), Expect = 7e-11
Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Frame = +3
Query: 249 WRLLDASQRGLLLFKLATLMERDAKYLAELETLDNGKPVKQAEQEVLWASGIVRYYAGKA 428
W + R L +A ++ YLA LETLD+GKP+ +A ++ + YYA A
Sbjct: 68 WSRAPGAVRAKYLKAIAAKIKDKKSYLALLETLDSGKPLDEAAGDMEDVAACFEYYADLA 127
Query: 429 DKILGN-----TIPADGEVLTFTLKEPVGVCGQILPWNYPIPM 542
+ + G ++P + ++ LKEP+GV G I PWNYP+ M
Sbjct: 128 EALDGKQRAPISLPME-NFESYVLKEPIGVVGLITPWNYPLLM 169
>07_01_0637 +
4767021-4767083,4767175-4767249,4767339-4767500,
4767624-4767702,4767922-4768076,4768225-4768288,
4768928-4769007,4769366-4769431,4769932-4769982,
4770087-4770238,4770270-4770287,4770323-4770413,
4771156-4771236,4771330-4771407,4772315-4772350,
4772425-4772468,4772567-4772645,4773035-4773125,
4773268-4773374
Length = 523
Score = 52.8 bits (121), Expect = 2e-07
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Frame = +3
Query: 249 WRLLDASQRGLLLFKLATLMERDAKYLAELETLDNGKPVKQAEQEVLWASGIVRYYAGKA 428
WR + R ++ K L+ + LAE T + GK +K A +V +V + G
Sbjct: 77 WRNTPVTTRQRIMLKYQELIRANMDKLAENITTEQGKTLKDAWGDVFRGLEVVEHACGMG 136
Query: 429 DKILGNTIP-ADGEVLTFTLKEPVGVCGQILPWNYP--IPMFI 548
+G + + TF+++EP+GVC I P+N+P IP+++
Sbjct: 137 TLQMGEYVSNVSNGIDTFSIREPLGVCAGICPFNFPAMIPLWM 179
>08_02_0717 +
20372728-20372836,20372936-20373078,20374131-20374211,
20374307-20374510,20374789-20374796,20375153-20375245,
20375377-20375500,20375585-20375650,20375841-20375907,
20376600-20376676,20377032-20377145,20377546-20377623,
20377705-20377856,20377960-20378020,20378292-20378398,
20378497-20378562,20379099-20379177,20379671-20379967
Length = 641
Score = 46.8 bits (106), Expect = 1e-05
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Frame = +3
Query: 234 HRYSEWRLLDASQRGLLLFKLAT-LMERDAKYLAELETLDNGKPVKQAEQEVLWASGIVR 410
+R +W + R L +A ++ER ++ LA LETLD GKP+ +A ++ +G
Sbjct: 61 NRGRDWARAPGAVRAKYLRAIAAKIIERKSE-LARLETLDCGKPLDEAAWDMDDVAGCFE 119
Query: 411 YYAGKADKI-LGNTIPADGEVLTFTL---KEPVGVCGQILPWNY 530
Y+A A+ + P + F KEP+GV G I PW +
Sbjct: 120 YFADLAESLDKRQNAPVSLPMENFKCYLRKEPIGVVGLITPWYF 163
>08_02_0811 +
21438848-21439001,21439469-21439662,21439769-21439897,
21441552-21441671,21441751-21441887,21441969-21442124,
21442565-21442943,21443041-21443157,21443225-21443371
Length = 510
Score = 41.1 bits (92), Expect = 6e-04
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Frame = +3
Query: 249 WRLLDASQRGLLLFKLATLMERDAKYLAELETLDNGKPVKQAEQEVLWASGIVRYYAGKA 428
W +R LL K A +++ +AE + KP K A EV+ + +V Y A +
Sbjct: 72 WARTPLWKRAELLHKAAAILKEHKTPIAECLVKEIAKPAKDAISEVVRSGDLVSYTAEEG 131
Query: 429 DKILG-------NTIPA-DGEVLTFTLKEPVGVCGQILPWNYPIPMFI 548
+ILG ++ P + + K P+GV I P+NYP+ + +
Sbjct: 132 VRILGEGKLLVSDSFPGNERNKYCLSSKVPLGVVLAIPPFNYPVNLAV 179
>07_03_0806 +
21654057-21655154,21655728-21655796,21656110-21656274,
21656416-21656589,21659506-21659769,21659957-21660070
Length = 627
Score = 29.5 bits (63), Expect = 1.8
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 283 CSSNWPPSWRETQNI 327
CS +WPP+WR+ ++I
Sbjct: 511 CSCDWPPNWRDNKDI 525
>07_03_1752 -
29218348-29218524,29218593-29218736,29218957-29219148,
29219225-29219440,29219873-29220010,29220137-29220232,
29221204-29221357,29221976-29222098,29222291-29222418,
29222669-29222773,29223396-29223437,29223631-29223746,
29223805-29223916
Length = 580
Score = 28.3 bits (60), Expect = 4.3
Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 5/100 (5%)
Frame = +3
Query: 249 WRLLDASQRGLLLFKLATLMERDAKYLAELETLDNGKPVKQAEQ-EVLWASGIVRYYAGK 425
W QR L L + + E+ + D GK + A E++ + + +
Sbjct: 140 WAKSSFKQRRQFLRILLKYILEHQDLICEISSRDTGKTMVDASLGEIMTTCEKITWLLDE 199
Query: 426 ADKILGNTIPADGEVLTFTLKE----PVGVCGQILPWNYP 533
+K L + G + + P+GV G I+ WNYP
Sbjct: 200 GEKWLKPEYRSCGRSMLHKKAKVEFYPLGVIGAIVSWNYP 239
>09_06_0212 + 21606245-21606401,21606505-21606782,21608330-21608551
Length = 218
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 260 GCFTKRPTALQTGHPHGERRKIFSRTRNTGQRKTSEASRTRSLVGIR 400
GC T R T G+ R+I + R+ G +KT + R+ GIR
Sbjct: 77 GCRTNRATRAGYWKSTGKDRRINYQNRSIGMKKTLVYYKGRAPQGIR 123
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 505 QTPTGSFKVNVRTSPSAGI 449
+ PTG +V VR SP+AG+
Sbjct: 118 RVPTGGARVRVRVSPAAGV 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,589,217
Number of Sequences: 37544
Number of extensions: 279773
Number of successful extensions: 644
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -