Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_G19
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual         27   1.3  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    26   2.9  
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc...    26   2.9  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    26   3.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   5.1  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    25   6.7  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    25   8.9  

>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 182

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = +2

Query: 242 VVAHLVPEKRADISA-DLILSGSKKNIAH-GALFLKDNTIKSEYGASKDNFNHLMTTVKK 415
           V  H++P K+AD S  DL+ S  +KN  +  +L+L  N     Y   +     +   + K
Sbjct: 96  VHVHIIPRKKADFSENDLVYSELEKNEGNLASLYLTGN---ERYAGDERPPTSMRQAIPK 152

Query: 416 DVEGLNDRIKDLGEKSSQ 469
           D E    R  +  EK +Q
Sbjct: 153 D-EDRKPRTLEEMEKEAQ 169


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 15/60 (25%), Positives = 25/60 (41%)
 Frame = +2

Query: 29  VSPRKFEFLAETPFVKVVHIDAGFTSTPEQRTYQSLFSVCLLEGNVVQIKTLMKDFQYFE 208
           +SPR F FL E     VV  +  FTS          +S    + +   +  +++ F Y +
Sbjct: 660 ISPRVFGFLLEYAAFNVVQTEGTFTSKVILTDLLKCYSNGTYKASFKNVHVVLRSFTYLK 719


>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 465

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -1

Query: 204 KYWKSFIRVFICT--TFPSNRQTLNS 133
           KYW  F R+F+ T   FP N   LNS
Sbjct: 140 KYWSDFNRLFLDTEYLFPVNCSELNS 165


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 19/76 (25%), Positives = 34/76 (44%)
 Frame = +2

Query: 272 ADISADLILSGSKKNIAHGALFLKDNTIKSEYGASKDNFNHLMTTVKKDVEGLNDRIKDL 451
           AD+S  ++   SK+N  H AL      + S     KD+  + ++   + ++ L D  +D 
Sbjct: 466 ADLSEQIVELESKRNDLHSALLEMGGNLTSLL-TKKDSIANKISDQSEHLKVLEDVQRDK 524

Query: 452 GEKSSQDFENLLKRAT 499
                ++   LLK  T
Sbjct: 525 VSAFGKNMPQLLKLIT 540


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 19/79 (24%), Positives = 37/79 (46%)
 Frame = -1

Query: 258 TRCATTVNLQPDSSVVNSKYWKSFIRVFICTTFPSNRQTLNSD**VLCSGVEVKPASMCT 79
           T  ++TV+  P ++   S +  SFI     ++ P+N   + +      SG E+K AS  +
Sbjct: 683 TTSSSTVSTPPPTTSFPSTFTTSFITSSSLSSIPNNSTEVKTA--STSSGTEIKTASTSS 740

Query: 78  TFTNGVSARNSNLRGDTSS 22
             ++  S   ++    T+S
Sbjct: 741 GSSSSSSYTPASSTSTTTS 759


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -1

Query: 114 SGVEVKPASMCTTFTNGVSARNSNLRGDTSSKSLETS 4
           S ++ KP+S  T  T+G     + +R +T S + +T+
Sbjct: 501 SSIDRKPSSFITVTTSGREHGRTPIRSNTFSPTFDTT 537


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 249 ATTVNLQPDSSVVNSKYW 196
           AT +N   D SVV S YW
Sbjct: 153 ATKINALEDHSVVGSPYW 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,168,366
Number of Sequences: 5004
Number of extensions: 43766
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)