Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_G19
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0259 - 21345100-21345891,21347081-21347516,21347602-21348161     31   0.55 
01_01_1135 - 9003823-9004182,9004308-9004367,9004441-9004683,900...    29   2.9  
10_08_0431 + 17871432-17871593,17871684-17871714,17872898-178730...    28   3.9  
05_03_0323 - 12424243-12424776                                         28   5.1  
02_04_0622 - 24508508-24508666,24509533-24509634,24510108-245101...    28   5.1  
10_08_0881 - 21268996-21269103,21269389-21269496,21269827-212699...    27   8.9  
05_03_0102 + 8414109-8414505,8416172-8416227                           27   8.9  

>02_04_0259 - 21345100-21345891,21347081-21347516,21347602-21348161
          Length = 595

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 18/73 (24%), Positives = 34/73 (46%)
 Frame = +2

Query: 281 SADLILSGSKKNIAHGALFLKDNTIKSEYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEK 460
           S  L+L   +  +A   + L D+ +  +YG S           ++D++GLN  I  + E 
Sbjct: 89  SLQLVLFSRQWGLAESLVALADHQLMLDYGLSVALDAIWFLRTEQDLQGLNHLIGKIVES 148

Query: 461 SSQDFENLLKRAT 499
            ++DF   + R +
Sbjct: 149 GAKDFARAILRTS 161


>01_01_1135 -
           9003823-9004182,9004308-9004367,9004441-9004683,
           9005207-9005305,9005807-9005986,9006090-9006164
          Length = 338

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +2

Query: 404 TVKKDVEGLNDRIKDLGEKSSQDFENLLKRAT 499
           T+++  E +ND  K+LGE SS++ ++ L  A+
Sbjct: 18  TLEEQQEKINDLRKELGEHSSEEIQDFLSDAS 49


>10_08_0431 +
           17871432-17871593,17871684-17871714,17872898-17873005,
           17873251-17873353,17874069-17874115,17874116-17874291,
           17874736-17874822
          Length = 237

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = +2

Query: 260 PEKRADISADLILSGSKKNIAHGALFL-KDNTIKSEYGASKDNFNHLMTTVKKDVEGLND 436
           P+  A I+      GSKKN  H    L +DN  K +Y  SKD     +    + +  L D
Sbjct: 146 PKTPAGIARCFTYGGSKKNTLHDPKILPRDNLSKEKY-MSKDEKQTSINHFHEKLFKLKD 204

Query: 437 RIK-DLGEKSSQ 469
            +K + G+K ++
Sbjct: 205 MMKTEAGKKRAE 216


>05_03_0323 - 12424243-12424776
          Length = 177

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 362 EYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFE 478
           +Y A +D     M +    +EG+ D +    EK+ QDFE
Sbjct: 24  QYKALRDVLRREMNSRMDTLEGITDELSQKFEKTIQDFE 62


>02_04_0622 - 24508508-24508666,24509533-24509634,24510108-24510176,
            24510294-24510362,24510428-24510502,24510584-24510688,
            24511309-24511407,24511521-24513230,24513489-24513788,
            24514748-24514846,24514962-24515079,24515166-24515251,
            24515334-24515402,24515746-24515843,24516373-24516534,
            24516779-24516787,24516970-24516991,24517620-24517712,
            24517872-24517940,24518720-24518782,24518882-24519037,
            24520895-24521230
          Length = 1355

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 299  SGSKKNIAHGALFLKDNTIKSEYGASKDN 385
            SG K N+ HG++FL  +T ++    S DN
Sbjct: 996  SGKKMNMVHGSIFLDISTGRTSSDVSIDN 1024


>10_08_0881 -
           21268996-21269103,21269389-21269496,21269827-21269916,
           21270010-21270246,21270335-21270901
          Length = 369

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 368 GASKDNFNHLMTTVKKDVEGLNDRIK 445
           G +      L TT+K++VEGL + +K
Sbjct: 300 GVTSSTLEELSTTIKQEVEGLQEAMK 325


>05_03_0102 + 8414109-8414505,8416172-8416227
          Length = 150

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 362 EYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFE 478
           +Y A +D     M +    +EG  D +    EK+ QDFE
Sbjct: 24  QYNALRDVLRREMNSRMDTLEGRTDELSQKFEKTIQDFE 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,534,792
Number of Sequences: 37544
Number of extensions: 268040
Number of successful extensions: 601
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)