Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_G19
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49766| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00033) 31 0.56
SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.74
SB_50765| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.74
SB_55733| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00036) 29 1.7
SB_12891| Best HMM Match : DUF164 (HMM E-Value=0.072) 29 1.7
SB_26768| Best HMM Match : PCI (HMM E-Value=0.01) 29 3.0
SB_9048| Best HMM Match : UPF0193 (HMM E-Value=0.38) 29 3.0
SB_28980| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_27088| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_51229| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_49766| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00033)
Length = 630
Score = 31.1 bits (67), Expect = 0.56
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +2
Query: 323 HGALFLKDNTIKSE-YGASKDNFNHLMTTVKKDVEGLNDRIKDL 451
H A+ L N++ E +G S FN+ +T K +E L D+I++L
Sbjct: 492 HSAITLSINSLPGEKHGPSFWKFNNSLTNDSKYIEALRDKIQEL 535
>SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1418
Score = 30.7 bits (66), Expect = 0.74
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -1
Query: 306 LPDKMRSALMSARFSGTRCAT--TVNLQPDSSVVNSKYW 196
+PD R+ + A+ SG C T TV PD+SVV S+ W
Sbjct: 1356 IPDIRRAVVQFAQRSGCFCCTCVTVVSTPDNSVVVSRTW 1394
>SB_50765| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 30.7 bits (66), Expect = 0.74
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = +2
Query: 290 LILSGSKKNIAH----GALFLKDNTIKSEYGASKDNFNHLMTTVKKDVEGLNDRIKDLGE 457
L +S K + H G L+++ TI + S D FN+L +T+ ++V ++D +
Sbjct: 129 LTISTKKTEVMHQPAPGKLYVEPTTINEQRLKSVDKFNYLGSTLSRNVV-IDDEVNARLA 187
Query: 458 KSSQDFENLLK 490
K S F L K
Sbjct: 188 KGSAAFGRLYK 198
>SB_55733| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00036)
Length = 1211
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 335 FLKDNTIKSE-YGASKDNFNHLMTTVKKDVEGLNDRIKD 448
F+KD+ K E Y A + ++K++EGLN IKD
Sbjct: 1093 FIKDSVRKQEMYSAELETLRQEKGDMEKEIEGLNRFIKD 1131
>SB_12891| Best HMM Match : DUF164 (HMM E-Value=0.072)
Length = 416
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 335 FLKDNTIKSE-YGASKDNFNHLMTTVKKDVEGLNDRIKD 448
F+KD+ K E Y A + ++K++EGLN IKD
Sbjct: 250 FIKDSVRKQEMYSAELETLRQEKGDMEKEIEGLNRFIKD 288
>SB_26768| Best HMM Match : PCI (HMM E-Value=0.01)
Length = 266
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 251 HLVPEKRADISADLILSGSKKNIAHGALFLKDNTIKSEYGASKD 382
HL A S DLI+ +I HG L K+ ++ EY +D
Sbjct: 128 HLTIVSLASKSKDLIIEAIYADIIHGKLDQKNKQLEVEYAMGRD 171
>SB_9048| Best HMM Match : UPF0193 (HMM E-Value=0.38)
Length = 663
Score = 28.7 bits (61), Expect = 3.0
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 10/114 (8%)
Frame = +2
Query: 176 KTLMKDFQYFEFT---------TEESGCKFTVVAHLVPEKRADISADLILSGSKKNIAHG 328
K+L+KDF+ F T +E +F V + P + ++ + L +K +A+
Sbjct: 231 KSLLKDFKVFARTMRLQYKYADSESEPHQFYVKSQWQPPPQPSVALETFLELTKSELANL 290
Query: 329 ALFLK-DNTIKSEYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLL 487
+ + DN E A D N+ +KK +G I D K + E LL
Sbjct: 291 SFEAQSDNITTGERQALNDLKNNRDIIIKKADKGTTTVICDTSTKIKEGTEQLL 344
>SB_28980| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 271
Score = 27.9 bits (59), Expect = 5.3
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
Frame = +2
Query: 149 LLEGNVVQIKTLMKDFQYFEFTTEESGCKFTVVAHLVPEKRADISADLILSGSKKNIAHG 328
LL+ V +T+ ++Y + +E +F V + P + ++ + L +K +A+
Sbjct: 141 LLKDFKVFARTMRLQYKYADSKSEPH--QFYVKSQWQPPPQPSVALETFLELTKSELANL 198
Query: 329 ALFLK-DNTIKSEYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLL 487
+ + DN E A D N+ +KK +G I D K + E LL
Sbjct: 199 SFEAQSDNITTGERQALNDLKNNRDIIIKKADKGTTTVICDTSTKIKEGTEQLL 252
>SB_27088| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = +2
Query: 314 NIAHGALFLKDNTIKSEYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLK 490
+I + AL+ SEY +K L+ KK+V+ L D +KDL + ++D N L+
Sbjct: 81 SIVNPALYQNFIITTSEYVNTKKKL-FLINDSKKEVDDLKDDLKDL-QAENKDLANKLQ 137
>SB_51229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 507
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +2
Query: 368 GASKDNFNHLMTTVKKDVEGLN-DRIKDLGEKSSQDFENLLKRATPY 505
G +D F L ++ LN D G ++FENL++ TPY
Sbjct: 347 GRKRDFFRDLERERQRSESDLNADNRLSKGSDYEKEFENLIESETPY 393
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,070,366
Number of Sequences: 59808
Number of extensions: 334260
Number of successful extensions: 781
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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