Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_G19
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical ...    30   0.85 
U49947-3|AAK68211.1|  114|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z72511-2|CAA96656.1|  413|Caenorhabditis elegans Hypothetical pr...    28   3.4  
U49955-1|AAA93430.1|  481|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z47745-4|CAA87665.2|  445|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AC006673-3|AAF39929.1|  861|Caenorhabditis elegans Hypothetical ...    27   6.0  
Z93379-10|CAB07594.1|  508|Caenorhabditis elegans Hypothetical p...    27   8.0  
Z92830-17|CAB07364.1|  508|Caenorhabditis elegans Hypothetical p...    27   8.0  
Z68748-8|CAL36498.1|  583|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z68748-4|CAD27622.1|  617|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z68748-3|CAA92953.2|  615|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U55372-3|ABF71724.1|  142|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical
           protein K02F6.4 protein.
          Length = 1193

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = +3

Query: 192 TSNISNSLQRNQAVNSRLLHTWYQKNVLTSVRISFYLAARRT*LMALYSLKIIPLNLNTV 371
           TS   N L   QAV   L + W+ K +  + + S  +  +        S K + +     
Sbjct: 294 TSGFLNGLGNVQAVKKDLNNEWFLKKIARNDKSSLIVLKQYLRFFETVSSKSVEMETVFT 353

Query: 372 PLRTIS 389
           PLRTIS
Sbjct: 354 PLRTIS 359


>U49947-3|AAK68211.1|  114|Caenorhabditis elegans Hypothetical
           protein C30G4.7 protein.
          Length = 114

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +2

Query: 320 AHGALFLKDNTIKSEYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQ-DFEN-LLKR 493
           AH  L + DN I+      K    HLM  V+++V+GL  +I DL     + + EN +LKR
Sbjct: 45  AHNVLNI-DNKIEQAMDLVK---THLMFAVREEVDGLRGKIFDLENHVRRLEAENSILKR 100

Query: 494 ATP 502
             P
Sbjct: 101 TIP 103


>Z72511-2|CAA96656.1|  413|Caenorhabditis elegans Hypothetical
           protein F55A11.2 protein.
          Length = 413

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 377 KDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENL 484
           +   +HL + VK D+ GLN +I  L E S +   N+
Sbjct: 181 RSQIDHLSSIVKSDITGLNKQIGQLQEFSKRRAGNM 216


>U49955-1|AAA93430.1|  481|Caenorhabditis elegans Hypothetical
           protein C27D9.1 protein.
          Length = 481

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +2

Query: 35  PRKFEFLAETPFVKVVH-IDAGFTSTPEQRTYQSLFSVCLLEGN 163
           PR FEFL     ++V   + +GFTS P+QR ++ +    LL+GN
Sbjct: 129 PRFFEFLNSVARIRVRDLLFSGFTS-PDQRIHECIL-YSLLDGN 170


>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical protein
            R10E11.1b protein.
          Length = 2056

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +1

Query: 46   RIPG*NTICEGRAHRCRFHLNSRTKDLSVAIQCLPIRRKCGADKNSDE 189
            RI G   +C+     C +H    T+D      C+ IR+K    K S +
Sbjct: 1596 RINGTCPVCKQLIALCCYHAKHCTRDACTVPFCMNIRQKLAEQKRSQQ 1643


>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical protein
            R10E11.1a protein.
          Length = 2045

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +1

Query: 46   RIPG*NTICEGRAHRCRFHLNSRTKDLSVAIQCLPIRRKCGADKNSDE 189
            RI G   +C+     C +H    T+D      C+ IR+K    K S +
Sbjct: 1585 RINGTCPVCKQLIALCCYHAKHCTRDACTVPFCMNIRQKLAEQKRSQQ 1632


>Z47745-4|CAA87665.2|  445|Caenorhabditis elegans Hypothetical
           protein T19H5.1 protein.
          Length = 445

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 29/128 (22%), Positives = 53/128 (41%)
 Frame = +2

Query: 107 TPEQRTYQSLFSVCLLEGNVVQIKTLMKDFQYFEFTTEESGCKFTVVAHLVPEKRADISA 286
           TP +  Y  LF + +L   ++ I  L+  F   E  +  S C   VV +    + + I++
Sbjct: 31  TPGKYIYIILFVILML---LLGIWFLIWSFDTVEKKSPVSNCNKRVVGYYSRSETSKITS 87

Query: 287 DLILSGSKKNIAHGALFLKDNTIKSEYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSS 466
             +   +    A       D T+K E    +D F  L   V      +   I   G+++S
Sbjct: 88  VQVSKLTHAVFAF-VYMNSDGTLKFEKQDEEDRFMQLKDIVNMGTSPVKIMISIGGKENS 146

Query: 467 QDFENLLK 490
           Q+F  +++
Sbjct: 147 QNFSPVIE 154


>AC006673-3|AAF39929.1|  861|Caenorhabditis elegans Hypothetical
           protein K09D9.11 protein.
          Length = 861

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = +2

Query: 398 MTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATP 502
           +TT++ + E L   ++++G+K+S++   +L   TP
Sbjct: 255 VTTIQNNTENLEKTVRNVGQKNSKNDSLVLSLQTP 289


>Z93379-10|CAB07594.1|  508|Caenorhabditis elegans Hypothetical
           protein F21H7.2 protein.
          Length = 508

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 103 LNSRTKDLSVAIQCLPIRRKCGADKNSDEGLPI 201
           +N+R  +  V  +C P+RR  G  KN    LPI
Sbjct: 1   MNNRGNNDFVEEKCAPVRRGAGPPKNVAAPLPI 33


>Z92830-17|CAB07364.1|  508|Caenorhabditis elegans Hypothetical
           protein F21H7.2 protein.
          Length = 508

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 103 LNSRTKDLSVAIQCLPIRRKCGADKNSDEGLPI 201
           +N+R  +  V  +C P+RR  G  KN    LPI
Sbjct: 1   MNNRGNNDFVEEKCAPVRRGAGPPKNVAAPLPI 33


>Z68748-8|CAL36498.1|  583|Caenorhabditis elegans Hypothetical
           protein F13H10.3c protein.
          Length = 583

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 134 LFSVCLLEGNVVQIKTLMKDFQYF 205
           +FSVC+L G V+    LM +F Y+
Sbjct: 219 VFSVCVLIGGVIVYWVLMSNFLYY 242


>Z68748-4|CAD27622.1|  617|Caenorhabditis elegans Hypothetical
           protein F13H10.3b protein.
          Length = 617

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 134 LFSVCLLEGNVVQIKTLMKDFQYF 205
           +FSVC+L G V+    LM +F Y+
Sbjct: 253 VFSVCVLIGGVIVYWVLMSNFLYY 276


>Z68748-3|CAA92953.2|  615|Caenorhabditis elegans Hypothetical
           protein F13H10.3a protein.
          Length = 615

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 134 LFSVCLLEGNVVQIKTLMKDFQYF 205
           +FSVC+L G V+    LM +F Y+
Sbjct: 251 VFSVCVLIGGVIVYWVLMSNFLYY 274


>U55372-3|ABF71724.1|  142|Caenorhabditis elegans Hypothetical
           protein C02G6.3 protein.
          Length = 142

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 73  EGRAHRCRFHLNSRTKDLSVAIQCLPIRRKC 165
           +G AH C +  N    DL+V I C P+   C
Sbjct: 16  DGSAHLCVYDANHNGDDLTVTISC-PLASGC 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,951,963
Number of Sequences: 27780
Number of extensions: 247768
Number of successful extensions: 788
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)