Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_G18
(332 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 30 0.081
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 27 0.75
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 0.99
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 26 1.3
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac... 26 1.7
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 25 2.3
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi... 25 2.3
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar... 25 2.3
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 3.0
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 4.0
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 24 5.3
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 24 5.3
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit... 24 7.0
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 9.2
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 23 9.2
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom... 23 9.2
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 23 9.2
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 23 9.2
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 30.3 bits (65), Expect = 0.081
Identities = 13/63 (20%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Frame = +2
Query: 101 LDVRRTTKKRENKKDDLTREMK--VDAEKKRRKKTANVEQRRQRSPKTAIVEERRLPSPK 274
L+ +R +R+ KD+ R K ++ EKK +++ +E+++ + + +++ ++ + +
Sbjct: 118 LEKKRIEAERQRLKDEEERRKKELMEKEKKEKERIRLIEEQKHKENEQRRLKQEQIDAKR 177
Query: 275 KED 283
KE+
Sbjct: 178 KEE 180
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 27.1 bits (57), Expect = 0.75
Identities = 15/71 (21%), Positives = 31/71 (43%)
Frame = +2
Query: 68 KRYQKTWEA*KLDVRRTTKKRENKKDDLTREMKVDAEKKRRKKTANVEQRRQRSPKTAIV 247
+RY + ++D + + N + +V+ EK+ R+ + QRR+ +
Sbjct: 132 QRYDRQLTPTRVDAFQPDGTQSNGRSYAEVMRQVELEKEERRVHMELNQRRREGTLKEVE 191
Query: 248 EERRLPSPKKE 280
EE + K+E
Sbjct: 192 EEESISDKKRE 202
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.6 bits (56), Expect = 0.99
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +2
Query: 98 KLDVRRTTKKRENKKDDLTREMKVDA-EKKRRKKTANVEQRRQRSPKTAIVEERRLPSPK 274
K V+++ K+ +KK + + K K+ K+ A + SPK + E +R SP+
Sbjct: 6 KTSVKKSVKETASKKGAIEKPSKSKKITKEAAKEIAKQSSKTDVSPKKSKKEAKRASSPE 65
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.2 bits (55), Expect = 1.3
Identities = 12/66 (18%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +2
Query: 104 DVRRTTKKRENKKDDLTREMKVDAEKKRRKKTANVEQRRQRSPKTAIVE--ERRLPSPKK 277
++ K+++ ++ RE + +KK++ K A E+R++R + + ++ L + ++
Sbjct: 575 EIEEENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQRREAERLAEQAAQKALEAKRQ 634
Query: 278 EDCNHR 295
E+ +
Sbjct: 635 EEARKK 640
Score = 24.2 bits (50), Expect = 5.3
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +2
Query: 68 KRYQKTWEA*KLDVRRTTKKRENKKDDLTREMKVDAEKKRRKKTANVEQRRQRS--PKTA 241
K +K + + + R RE + + + ++ K+R K E+RR+R K +
Sbjct: 669 KEREKKLKKQQQEADREKMAREQRLREEEEKRILEERKRREKLDKEEEERRRRELLEKES 728
Query: 242 IVEERRLPSPK 274
+ERRL K
Sbjct: 729 EEKERRLREAK 739
>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 25.8 bits (54), Expect = 1.7
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Frame = +2
Query: 68 KRYQKTWEA*KLDVRRTTKKRENKKDDLTREMKVDA-----EKKRRKKTANVEQRRQRSP 232
+R ++ ++ LD K RE D T ++D E KR+ K E RRQ+
Sbjct: 133 ERRKREEKSSNLDEEELRKSRETVYRDATGR-RIDLVLARKEAKRKLKEKEEEARRQKEQ 191
Query: 233 KTAIVEERRLPSPKKE 280
+ +V+ R+ KE
Sbjct: 192 QQGVVQVRQQKEYLKE 207
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 25.4 bits (53), Expect = 2.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 195 RLQMLNKEDSDRRRLQSSKKEDC 263
+L+MLN E+S + L KK DC
Sbjct: 542 QLEMLNAENSALKALLEDKKVDC 564
>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 965
Score = 25.4 bits (53), Expect = 2.3
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +2
Query: 98 KLDVRRTTKKREN-KKDDLTREMKVDAEKKRRKKTANVEQRRQRSPKTAIVEERRLPSPK 274
K R +RE K EMK+D + K+ +E ++S +I + PK
Sbjct: 821 KAQARAKRAEREKASKGSNDDEMKIDKKTTEEKEATPMEMDEEKSQDISINGNSKKEEPK 880
Query: 275 KE 280
E
Sbjct: 881 SE 882
>SPBC2F12.11c |rep2||transcriptional activator
Rep2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 219
Score = 25.4 bits (53), Expect = 2.3
Identities = 14/65 (21%), Positives = 31/65 (47%)
Frame = +2
Query: 38 QQTET*LVLIKRYQKTWEA*KLDVRRTTKKRENKKDDLTREMKVDAEKKRRKKTANVEQR 217
QQT+ ++ ++ K A L + ++REN D +K ++ R++ V++
Sbjct: 109 QQTDPPQIIHRKQDKGLMARVLSRSKKQEERENHSSDARDAIKSALRRRMRRREGRVQKA 168
Query: 218 RQRSP 232
+ +P
Sbjct: 169 LRPTP 173
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.0 bits (52), Expect = 3.0
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +2
Query: 59 VLIKRYQKTWEA*KLDVRRTTKKRENKKDDLTREMKVDAEKKRRKKTANVEQRRQRS 229
V + YQ+ A ++VRR ++RE + + +V + KK RK E R+Q++
Sbjct: 2427 VFARAYQEVRNA-AIEVRR--ERREKRAIEQVVAPEVASRKKIRKNERKRENRKQKT 2480
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 24.6 bits (51), Expect = 4.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 40 TDGNLISIDQKIPKNVGSLK 99
TD L+S+ +K+P+NV LK
Sbjct: 1145 TDSVLLSMAKKLPRNVKELK 1164
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 24.2 bits (50), Expect = 5.3
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +2
Query: 77 QKTWEA*KLD--VRRTTKKRENKKDDLTREMKVDAEKKRRKKTANVEQRRQRSPKT 238
+K ++ K+D RRT+ + + E ++ K RRK T + RQ+ T
Sbjct: 124 KKKYKKIKVDPSARRTSSRMHTVLMAQSTETRLQEAKPRRKYTVSASANRQKGTMT 179
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 24.2 bits (50), Expect = 5.3
Identities = 11/46 (23%), Positives = 23/46 (50%)
Frame = +2
Query: 104 DVRRTTKKRENKKDDLTREMKVDAEKKRRKKTANVEQRRQRSPKTA 241
++ R K+R ++++ +K A ++ K AN R+P T+
Sbjct: 121 EIERDKKRRAAERENKNSSVKETAAPIKQPKNANSSSTCTRTPPTS 166
>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 23.8 bits (49), Expect = 7.0
Identities = 11/48 (22%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 143 DDLTRE-MKVDAEKKRRKKTANVEQRRQRSPKTAIVEERRLPSPKKED 283
DD ++ K++AE +++ + + R+ + EER+ + +K+D
Sbjct: 344 DDAIKDPTKIEAEVRKQVEERRLRHERENEERKLTPEERKEKAFRKKD 391
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 23.4 bits (48), Expect = 9.2
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +2
Query: 65 IKRYQKTWEA*KLDVRRTTKK--RENKKDDL 151
++RY T A +LDVRR + R +K DL
Sbjct: 152 LRRYYSTRTAQRLDVRRPASRSSRYSKTSDL 182
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 23.4 bits (48), Expect = 9.2
Identities = 8/19 (42%), Positives = 16/19 (84%)
Frame = +3
Query: 204 MLNKEDSDRRRLQSSKKED 260
+LN+E+ R+R+++ KKE+
Sbjct: 318 VLNREEKRRQRMEAFKKEN 336
>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 23.4 bits (48), Expect = 9.2
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = +2
Query: 101 LDVRRTTKKRENKKDDLTREMKVDAEKKRRKKTANVEQRRQRSPKTAIVEER 256
LD+ KR K ++ + M V +R K RQR +V ER
Sbjct: 381 LDIADHNVKRYGKSEESSSTMNVGEGLLKRTKKYIPILSRQRQESVEVVNER 432
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 23.4 bits (48), Expect = 9.2
Identities = 8/31 (25%), Positives = 20/31 (64%)
Frame = +2
Query: 137 KKDDLTREMKVDAEKKRRKKTANVEQRRQRS 229
KK++ R+ + EKK +K+ ++++++S
Sbjct: 443 KKEEKRRKKEAKKEKKEKKEKKEKKEKKKKS 473
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 23.4 bits (48), Expect = 9.2
Identities = 8/16 (50%), Positives = 14/16 (87%)
Frame = +2
Query: 227 SPKTAIVEERRLPSPK 274
S KTAI+++R+ P+P+
Sbjct: 127 SIKTAIIDDRKRPNPR 142
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,173,464
Number of Sequences: 5004
Number of extensions: 19219
Number of successful extensions: 124
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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