Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_G18
         (332 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    25   0.32 
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              22   1.7  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              22   1.7  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   3.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   9.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    20   9.1  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            20   9.1  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 24.6 bits (51), Expect = 0.32
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 104 DVRRTTKKRENKKDDLTREMKVDAEKKRRKKTAN 205
           D+R  TK+ + KK   +R    + EK RR    N
Sbjct: 33  DMRTVTKRPKTKKSQGSRTTHNELEKNRRAHLRN 66


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 10  KKLIRNHKMTTDGNLISIDQKIPKNVGSLKTGREKNN 120
           KKL+    + +D N+     K+ K  G  KT +E  N
Sbjct: 98  KKLVAECSVISDANIYIRFNKLVKCFGKYKTMKEVLN 134


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 10  KKLIRNHKMTTDGNLISIDQKIPKNVGSLKTGREKNN 120
           KKL+    + +D N+     K+ K  G  KT +E  N
Sbjct: 98  KKLVAECSVISDANIYIRFNKLVKCFGKYKTMKEVLN 134


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +1

Query: 253 KKTAIAEERRLQPPMT-DDCNRR 318
           + T I EERR+  P+T  D  RR
Sbjct: 664 ESTFIPEERRIYSPITFQDVARR 686



 Score = 20.2 bits (40), Expect = 6.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 177 KRNGERRLQMLNKEDSDRRRLQSSKKEDC 263
           KR  E   QM+ K+ +DR R   +  + C
Sbjct: 389 KRTDELLYQMIPKQVADRLRNGENPIDTC 417


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 289 VAVFFLRRWQSSFFDD 242
           +  +F  R+Q  FFD+
Sbjct: 412 ITEYFEHRYQGKFFDE 427


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 289 VAVFFLRRWQSSFFDD 242
           +  +F  R+Q  FFD+
Sbjct: 380 ITEYFEHRYQGKFFDE 395


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 176 EKKRRKKTANVEQ 214
           +KKRRKK  N  Q
Sbjct: 7   KKKRRKKNLNQNQ 19


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,993
Number of Sequences: 438
Number of extensions: 1371
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)