Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_G17
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         27   2.1  
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp...    27   2.1  
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    26   2.8  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    26   2.8  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    26   3.7  
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    25   8.5  

>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 348 VFICLSTCLKQLQLLERIHFVSFILMK*HIFHSSTILNL 464
           +F CLS+C   L +L  I   SF+ +    +H+  + ++
Sbjct: 49  IFKCLSSCNYALSILHNICLASFLYLSKCYYHTHILTSV 87


>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 100 FTYNLLR*SPILNPNSVNFTLKN 168
           F YNLL   PIL  + +N+ L+N
Sbjct: 223 FGYNLLNSPPILQSSKINWALEN 245


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/54 (24%), Positives = 24/54 (44%)
 Frame = +1

Query: 235 HLFNIYVYYLCSFIL*YSWKKMLNGIRLVYVQILCAIKFLSVYLRVSNNYNFWR 396
           H+   Y YYL +  +   WKK +   ++V         + +VY  V+    F++
Sbjct: 178 HVTMYYYYYLVAKGIRVPWKKWVTRFQIVQFFADLGFIYFAVYTEVAYRLKFYK 231


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 202 LVNCYLYFIYSHLFNIYVYYLCSFI 276
           L    LYF YS L ++ V++LC  +
Sbjct: 586 LATAVLYFGYSLLISVLVFFLCGSV 610


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = -2

Query: 238 NGYR*NIDNNLRALGNAFTVSCSCSLK*N*RSLDLKLVIILANCR*SGKEFHNRVAVIVN 59
           N  R N    + A+ N  TV     +K   +S D KL  +LA  R +GKE+  +   +VN
Sbjct: 222 NDTRMNTTLAVTAIDNGATVLNYMEVKKLLKSKDNKLEGVLAIDRETGKEYQIKATSVVN 281


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 151 NFTLKNRNKKL*KHFPKLVNCYLYFIYSH-LFNIYVYYLCSF 273
           NFTL+ +   L KH P   +  L+   +H   N+Y + L  F
Sbjct: 436 NFTLRRKANILAKHLPPRTDIVLFIKPTHQQENVYGHVLDGF 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,923,509
Number of Sequences: 5004
Number of extensions: 36588
Number of successful extensions: 82
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)