Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_G17
         (503 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0633 + 20120560-20123464,20123608-20123672                       29   2.1  
03_06_0772 - 36162537-36162745,36163131-36163171,36163316-361636...    29   2.1  
12_01_0486 + 3854889-3855014,3855897-3856089,3856206-3856310,385...    27   8.6  
11_01_0518 + 4057428-4057538,4059609-4059801,4059921-4060025,406...    27   8.6  
01_06_0333 + 28528413-28529364,28529504-28529539,28529800-28530872     27   8.6  

>07_03_0633 + 20120560-20123464,20123608-20123672
          Length = 989

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +3

Query: 339  CNKVFICLSTCLKQLQLLERI---HFVSFILMK*HIFHSSTILNL 464
            CN++F C  +CL +L  L R+   H +  I +   +  S  +LNL
Sbjct: 877  CNEIFACNPSCLDRLTSLVRLKIHHCLGKIYLPCRLLESIEVLNL 921


>03_06_0772 -
           36162537-36162745,36163131-36163171,36163316-36163600,
           36163710-36163813,36163924-36164021,36165039-36165213,
           36166429-36166578,36167113-36167193,36167246-36167299,
           36167422-36167679
          Length = 484

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 318 RLCTNFMCNKVFICLSTCLKQLQ 386
           R C N  CN++++C   C+++L+
Sbjct: 390 RNCANIDCNRLYLCCGRCVEELR 412


>12_01_0486 +
           3854889-3855014,3855897-3856089,3856206-3856310,
           3856541-3856629,3856720-3856872,3857047-3857181,
           3857293-3857459,3858193-3858287,3858495-3858868,
           3859101-3859374,3859464-3859531
          Length = 592

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +1

Query: 217 LYFIYSHLFNIYVYYLCSFIL*YSWKKMLNGIRLVYVQILCAIKFLSVYLRVSNNYNF-W 393
           +YF+++  +N  VYY+  F+L       L  + L+ V I C     + +L  + NY++ W
Sbjct: 468 MYFVFTSFWNYKVYYVYGFML-------LVFVILLIVTI-CVTIVGTYFLLNAENYHWQW 519

Query: 394 REFIS 408
             F+S
Sbjct: 520 TSFLS 524


>11_01_0518 +
           4057428-4057538,4059609-4059801,4059921-4060025,
           4060259-4060347,4060424-4060576,4060754-4060888,
           4061241-4061407,4062129-4062223,4062367-4062740,
           4062903-4063176,4063806-4063822
          Length = 570

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 217 LYFIYSHLFNIYVYYLCSFIL*YSWKKMLNGIRLVYVQILCAIKFLSVYLRVSNNYNF-W 393
           +YF+++  +N  VYY+  F+L       L  + L+ V I C     + +L  + NY++ W
Sbjct: 463 MYFVFTSFWNYKVYYVYGFML-------LVFVILIIVTI-CVTIVGTYFLLNAENYHWQW 514

Query: 394 REFIS 408
             F S
Sbjct: 515 TSFFS 519


>01_06_0333 + 28528413-28529364,28529504-28529539,28529800-28530872
          Length = 686

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -2

Query: 130 LVIILANCR*SGKEFHNRVAVIVNELEYNVI 38
           +V +L NCR + KEF N VA I      NVI
Sbjct: 423 VVKLLKNCRGNDKEFLNEVASIGTISHVNVI 453


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,757,205
Number of Sequences: 37544
Number of extensions: 177432
Number of successful extensions: 311
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)