Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_G17
         (503 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016449-13|AAG24003.1|  350|Caenorhabditis elegans Serpentine r...    29   1.4  
Z75951-1|CAB00091.2|  408|Caenorhabditis elegans Hypothetical pr...    28   3.3  
AL032632-15|CAA21593.1|  344|Caenorhabditis elegans Hypothetical...    28   3.3  
AL022273-1|CAA18356.1|  344|Caenorhabditis elegans Hypothetical ...    28   3.3  
Z98860-2|CAB11545.1|  337|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AF497830-1|AAM18108.1|  533|Caenorhabditis elegans putative Na-H...    27   7.7  
AF098995-2|AAC67478.2|  538|Caenorhabditis elegans Na/h exchange...    27   7.7  
AF098995-1|AAR30204.1|  634|Caenorhabditis elegans Na/h exchange...    27   7.7  

>AF016449-13|AAG24003.1|  350|Caenorhabditis elegans Serpentine
           receptor, class t protein8 protein.
          Length = 350

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
 Frame = +1

Query: 205 VNCYLYFIYSHLFNIYVYYLCSFIL*YSWKK--------MLNGIRLVYVQILCAIKFLSV 360
           +N  LY++++H FN+   Y C   +  S +K        +++GI  + +  LC +  L +
Sbjct: 3   LNMSLYYVFTHSFNLPEEYACPDFMTKSSRKQPLLGAYFLISGIVFLVLYFLCFLAVLKL 62

Query: 361 YLRV 372
            L++
Sbjct: 63  NLKI 66


>Z75951-1|CAB00091.2|  408|Caenorhabditis elegans Hypothetical
           protein F14A5.1 protein.
          Length = 408

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +3

Query: 51  SSSFTITATRLWNSLPLHLQFAKIITNFKSKLRQFYFKEQEQETVK 188
           S+S + T++ + +S     +F+KI+     +L QFY KE E+  V+
Sbjct: 172 STSRSSTSSSIKHSSDTSTEFSKILHLSNDELLQFYLKEVERTMVQ 217


>AL032632-15|CAA21593.1|  344|Caenorhabditis elegans Hypothetical
           protein H22D14.1 protein.
          Length = 344

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +3

Query: 51  SSSFTITATRLWNSLPLHLQFAKIITNFKSKLRQFYFKEQEQETVK 188
           S+S + T++ + +S     +F+KI+     +L QFY KE E+  V+
Sbjct: 122 STSRSSTSSSIKHSSDTSTEFSKILHLSNDELLQFYLKEVERTMVQ 167


>AL022273-1|CAA18356.1|  344|Caenorhabditis elegans Hypothetical
           protein H22D14.1 protein.
          Length = 344

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +3

Query: 51  SSSFTITATRLWNSLPLHLQFAKIITNFKSKLRQFYFKEQEQETVK 188
           S+S + T++ + +S     +F+KI+     +L QFY KE E+  V+
Sbjct: 122 STSRSSTSSSIKHSSDTSTEFSKILHLSNDELLQFYLKEVERTMVQ 167


>Z98860-2|CAB11545.1|  337|Caenorhabditis elegans Hypothetical
           protein Y26G10.2 protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 196 PKLVNCYLYFIYSHLFNIYVYYLCSFIL 279
           PK      +F+  H+F+I   +LCSF+L
Sbjct: 46  PKNFGSLKWFLVFHIFSITCQWLCSFLL 73


>AF497830-1|AAM18108.1|  533|Caenorhabditis elegans putative Na-H
           exchanger isoform 6 protein.
          Length = 533

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +3

Query: 144 LRQFYFKEQEQETVKAFPKARKLLSI 221
           +RQ+  +  EQETVKA  K  K+LSI
Sbjct: 316 MRQYCRENVEQETVKATEKFIKVLSI 341


>AF098995-2|AAC67478.2|  538|Caenorhabditis elegans Na/h exchanger
           protein 6, isoform a protein.
          Length = 538

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +3

Query: 144 LRQFYFKEQEQETVKAFPKARKLLSI 221
           +RQ+  +  EQETVKA  K  K+LSI
Sbjct: 316 MRQYCRENVEQETVKATEKFIKVLSI 341


>AF098995-1|AAR30204.1|  634|Caenorhabditis elegans Na/h exchanger
           protein 6, isoform b protein.
          Length = 634

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +3

Query: 144 LRQFYFKEQEQETVKAFPKARKLLSI 221
           +RQ+  +  EQETVKA  K  K+LSI
Sbjct: 316 MRQYCRENVEQETVKATEKFIKVLSI 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,330,732
Number of Sequences: 27780
Number of extensions: 196582
Number of successful extensions: 479
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)