Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_G17
         (503 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   4.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   4.2  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    21   7.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.3  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 198 WEMLLQFLVPVL*SKIDGVWI 136
           W   LQFLVP+L       W+
Sbjct: 292 WSGCLQFLVPMLQGFPSNSWV 312


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 198 WEMLLQFLVPVL*SKIDGVWI 136
           W   LQFLVP+L       W+
Sbjct: 260 WSGCLQFLVPMLQGFPSNSWV 280


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 397 LSKSCNCLRHV 365
           +S  CNC RHV
Sbjct: 26  MSIKCNCKRHV 36


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 167  FFKVKLTEFGFKIGDYL 117
            F  VKL++FGF   D L
Sbjct: 1408 FKDVKLSDFGFSTEDIL 1424


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,452
Number of Sequences: 438
Number of extensions: 2459
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)