Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_G15
         (447 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    61   9e-11
SPAC9E9.14 |vps24||vacuolar sorting protein Vps24|Schizosaccharo...    36   0.004
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    27   0.99 
SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo...    26   3.0  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    25   4.0  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    25   4.0  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 60.9 bits (141), Expect = 9e-11
 Identities = 27/55 (49%), Positives = 39/55 (70%)
 Frame = +1

Query: 274 MMEWLFGHRMTPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKEG 438
           +  WLFG   +P E LR +QR+L +A R+LDRER K++Q+E+ +I +IK  AK G
Sbjct: 3   LTSWLFGGGKSPQEQLRAHQRSLGRAERELDRERTKLDQRERALIQEIKGSAKAG 57


>SPAC9E9.14 |vps24||vacuolar sorting protein
           Vps24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 35.5 bits (78), Expect = 0.004
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +1

Query: 268 EVMMEWLFGHRMTPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKEGQM 444
           + +  + FG   TP E  RK Q  + K  R LDR+   ++   KK    +K+LAK+  +
Sbjct: 2   QTVRSYFFGP--TPQEQNRKWQSIIRKEQRQLDRQVYHLKAGRKKAEVQLKQLAKQSDI 58


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 27.5 bits (58), Expect = 0.99
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 325 KNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKEGQM 444
           K  R+L K +R +D  + ++   EK     +KK+  EG++
Sbjct: 524 KKIRSLCKKLRAIDDLKSRLNNNEKLEATQVKKIESEGKV 563


>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
           Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 13/61 (21%), Positives = 32/61 (52%)
 Frame = +1

Query: 253 LISIKEVMMEWLFGHRMTPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAK 432
           L S+K +++  +  + ++  + L   + A+  A RD++  R   +  E + +AD +K  +
Sbjct: 246 LSSLKYMLLSQIMLNSVSEVKSLLTGKHAIRYAGRDIEAMRAIAQAHENRSLADFEKALQ 305

Query: 433 E 435
           +
Sbjct: 306 D 306


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +1

Query: 250  HLISIKEVMMEWLFGHRMTPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKV 405
            HLI I  +  +WL+      DE L K  + ++     L +E+ K+++  ++V
Sbjct: 1362 HLIPIYSLPQDWLWCETWCSDESL-KTAKTIDLCQNPLTKEK-KLDRARRQV 1411


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 183 HHSIYRRFFAI*IQKLIISLYLTFNIYKRSNDGVVIW 293
           H+  +RRF+ I ++ L+I + L  +IY        +W
Sbjct: 39  HYFHFRRFWTIWLKSLVIMVLLFTHIYDCYKTNESVW 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,683,843
Number of Sequences: 5004
Number of extensions: 31330
Number of successful extensions: 69
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)