Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_G15
         (447 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-7|CAB60355.1|  237|Caenorhabditis elegans Hypothetical ...    89   1e-18
U58762-6|AAG01563.2|  208|Caenorhabditis elegans Hypothetical pr...    50   1e-06
Z81029-3|CAB02699.2|  207|Caenorhabditis elegans Hypothetical pr...    47   7e-06
Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical pr...    31   0.29 
AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1 ...    31   0.29 
U40951-3|AAG01564.2|  242|Caenorhabditis elegans Uncoordinated p...    30   0.88 
AB107357-1|BAD89378.1|  242|Caenorhabditis elegans troponin I 2 ...    30   0.88 
U80440-3|AAK21470.2|  380|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z81509-2|CAB04155.1|  239|Caenorhabditis elegans Hypothetical pr...    28   3.6  
U70854-5|AAB09157.1|  589|Caenorhabditis elegans Dnaj domain (pr...    28   3.6  
AF149288-1|AAF99087.1|  644|Caenorhabditis elegans KRP85 protein.      28   3.6  
AC024801-1|AAK68513.1|  646|Caenorhabditis elegans Kinesin-like ...    28   3.6  
Z82269-1|CAB05205.2|  651|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z82067-1|CAB63317.1|  794|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical pr...    27   8.2  
AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical ...    27   8.2  

>AL110485-7|CAB60355.1|  237|Caenorhabditis elegans Hypothetical
           protein Y46G5A.12 protein.
          Length = 237

 Score = 89.4 bits (212), Expect = 1e-18
 Identities = 41/57 (71%), Positives = 50/57 (87%)
 Frame = +1

Query: 277 MEWLFGHRMTPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKEGQMD 447
           M++LFG R TP E+LR+NQRALNKA+R+LDRER +ME QEKKVIADIK +AK+ QMD
Sbjct: 1   MDFLFGRRKTPAELLRQNQRALNKAIRELDRERARMEAQEKKVIADIKNMAKKNQMD 57


>U58762-6|AAG01563.2|  208|Caenorhabditis elegans Hypothetical
           protein T27F7.1 protein.
          Length = 208

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 22/54 (40%), Positives = 36/54 (66%)
 Frame = +1

Query: 286 LFGHRMTPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKEGQMD 447
           LFG +  P E +R+ QR + + MR LDR+   ++++E+KV  +IK+ AK+G  D
Sbjct: 3   LFGKKKDPKEEVRELQRKMRQEMRSLDRQVYSIQREEQKVTKEIKEAAKKGDKD 56


>Z81029-3|CAB02699.2|  207|Caenorhabditis elegans Hypothetical
           protein C01A2.4 protein.
          Length = 207

 Score = 46.8 bits (106), Expect = 7e-06
 Identities = 21/47 (44%), Positives = 33/47 (70%)
 Frame = +1

Query: 307 PDEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKEGQMD 447
           P E+ R N+R L K  RDL+ +R +M+++EK++  +IKKLA +G  D
Sbjct: 9   PKELERANKRELRKTNRDLESDRRQMDRREKELEQEIKKLAAKGHND 55


>Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical
           protein F42E11.4 protein.
          Length = 250

 Score = 31.5 bits (68), Expect = 0.29
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = +1

Query: 301 MTPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIAD 414
           +TP+   +  +  +NKA  DL  ++++ EQ+  KV+A+
Sbjct: 53  LTPERKKKLRKLLMNKAAEDLKTQQLRKEQERVKVLAE 90


>AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1
           protein.
          Length = 250

 Score = 31.5 bits (68), Expect = 0.29
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = +1

Query: 301 MTPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIAD 414
           +TP+   +  +  +NKA  DL  ++++ EQ+  KV+A+
Sbjct: 53  LTPERKKKLRKLLMNKAAEDLKTQQLRKEQERVKVLAE 90


>U40951-3|AAG01564.2|  242|Caenorhabditis elegans Uncoordinated
           protein 27 protein.
          Length = 242

 Score = 29.9 bits (64), Expect = 0.88
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +1

Query: 301 MTPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIAD 414
           +TP+   +  +  + KA  DL R+++  EQ+ +K +AD
Sbjct: 41  LTPERKKKLRKLLMVKAAEDLKRQQLLKEQERQKALAD 78


>AB107357-1|BAD89378.1|  242|Caenorhabditis elegans troponin I 2
           protein.
          Length = 242

 Score = 29.9 bits (64), Expect = 0.88
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +1

Query: 301 MTPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIAD 414
           +TP+   +  +  + KA  DL R+++  EQ+ +K +AD
Sbjct: 41  LTPERKKKLRKLLMVKAAEDLKRQQLLKEQERQKALAD 78


>U80440-3|AAK21470.2|  380|Caenorhabditis elegans Hypothetical
           protein T21E12.2 protein.
          Length = 380

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 369 PVEISHSFIESSLVLAEHLIRCHTMPK*PLHHYFFYRY*MLNTN 238
           P+E  H+ IE +L         H+M    L+H+FF    +L TN
Sbjct: 310 PIESVHNKIEKNLATTTTTFLLHSMLLLFLYHFFFLLALLLQTN 353


>Z81509-2|CAB04155.1|  239|Caenorhabditis elegans Hypothetical
           protein F21A3.4 protein.
          Length = 239

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/41 (29%), Positives = 28/41 (68%)
 Frame = +1

Query: 313 EMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKE 435
           EML++ +++L + +     E  +MEQ++KK++ +++ L K+
Sbjct: 177 EMLKEQRKSLGERVE----EEKRMEQEQKKMLEELEMLLKK 213


>U70854-5|AAB09157.1|  589|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 11 protein.
          Length = 589

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 310 DEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKE 435
           D+     QRA+ +    +DRE+ + E+ E K   +  + AKE
Sbjct: 302 DKAKEDKQRAIREKQEAIDREKREKEEAEAKQKEEADRKAKE 343


>AF149288-1|AAF99087.1|  644|Caenorhabditis elegans KRP85 protein.
          Length = 644

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = +1

Query: 295 HRMTPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKE 435
           HR+  + M  +N+  L KA  + ++ R K+E+ EKK+I   + L ++
Sbjct: 405 HRLVKEMM--ENEAELKKARSEHEKLRSKLEKIEKKLIVGGENLLEK 449


>AC024801-1|AAK68513.1|  646|Caenorhabditis elegans Kinesin-like
           protein protein 20 protein.
          Length = 646

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = +1

Query: 295 HRMTPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKE 435
           HR+  + M  +N+  L KA  + ++ R K+E+ EKK+I   + L ++
Sbjct: 407 HRLVKEMM--ENEAELKKARSEHEKLRSKLEKIEKKLIVGGENLLEK 451


>Z82269-1|CAB05205.2|  651|Caenorhabditis elegans Hypothetical
           protein F52G2.3 protein.
          Length = 651

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 355 RDLDRERMKMEQQEKKVIADIKKLAKEGQM 444
           RD    R+KM + E+K IADI++  K+ ++
Sbjct: 164 RDAAEVRLKMMEFERKRIADIQRTTKQTRL 193


>Z82067-1|CAB63317.1|  794|Caenorhabditis elegans Hypothetical
           protein W03H9.1 protein.
          Length = 794

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 363 EISHSFIESSLVLAEHLIRCHTMPK*PLHH 274
           E+ H+F E  +    HL+ CH +P    HH
Sbjct: 709 EMKHAFPEEIVTPKLHLLACHLIPYMREHH 738


>Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical protein
            K12D12.1 protein.
          Length = 1520

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = +1

Query: 292  GHRMTPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKEGQ 441
            G R+ P  ML    +A  + M    +ER+K E +E K   + KK+ KEGQ
Sbjct: 1272 GQRIEP--MLDAATKAKYEKMSQPKKERVKKEPKEPK---EPKKVKKEGQ 1316


>Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical protein
            K12D12.1 protein.
          Length = 1520

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = +1

Query: 292  GHRMTPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKEGQ 441
            G R+ P  ML    +A  + M    +ER+K E +E K   + KK+ KEGQ
Sbjct: 1272 GQRIEP--MLDAATKAKYEKMSQPKKERVKKEPKEPK---EPKKVKKEGQ 1316


>AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical
           protein Y48G1C.5 protein.
          Length = 1161

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +1

Query: 250 HLISIKEVMMEWLFGHRM-TPDEMLRKNQ----RALNKAMRDLDRERMKMEQQEKKVIAD 414
           H+I ++E+   WL G  +   + +LRK++      L   +  LD + + +   E KVIA 
Sbjct: 326 HMIFLRELETIWLLGEEVRNVERLLRKDRFSTISQLFNTIERLDIQSLNVLVDEAKVIAQ 385

Query: 415 IKK 423
             K
Sbjct: 386 CAK 388


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,191,483
Number of Sequences: 27780
Number of extensions: 172344
Number of successful extensions: 529
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)