Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_G14
         (557 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1440 + 26561985-26563019                                         28   4.4  
04_03_0175 + 12269091-12269561                                         28   5.8  
12_02_0405 - 18635503-18635871,18636703-18636817,18636970-186377...    27   7.7  
04_03_0986 + 21456241-21456852,21456937-21457110,21457216-21457800     23   8.7  

>07_03_1440 + 26561985-26563019
          Length = 344

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
 Frame = +3

Query: 372 SAGRPHASNICG-INERGGDGDFFERFNGASVTSTCSASTGCGAGVVP 512
           S GR H S+    +N     G        AS+T  CSA+   G G  P
Sbjct: 212 SVGRSHCSSFSDRLNSSSSSGSDINPALAASLTQQCSANASSGGGGDP 259


>04_03_0175 + 12269091-12269561
          Length = 156

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 20/55 (36%), Positives = 24/55 (43%)
 Frame = +3

Query: 342 GRGGVAETCGSAGRPHASNICGINERGGDGDFFERFNGASVTSTCSASTGCGAGV 506
           GRG  AE   +AG    +   G    GG     E    +S+T  CSA  G G GV
Sbjct: 44  GRGAAAEESFAAGSGGETVFTG----GGVASCGEAAGASSLTGGCSARGGEGGGV 94


>12_02_0405 -
           18635503-18635871,18636703-18636817,18636970-18637721,
           18638540-18638542
          Length = 412

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 411 NERGGDGDFFERFNGASVTSTCS 479
           ++ GGD DFF R+N   +  +C+
Sbjct: 115 DDDGGDRDFFARYNNDDMVGSCN 137


>04_03_0986 + 21456241-21456852,21456937-21457110,21457216-21457800
          Length = 456

 Score = 23.4 bits (48), Expect(2) = 8.7
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -3

Query: 555 RDAHC--ERVLSCRATAERHRRRS 490
           RDA+   +  + C A AE+HR RS
Sbjct: 104 RDAYARWDAAVGCAAFAEKHRSRS 127



 Score = 22.2 bits (45), Expect(2) = 8.7
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 375 RSRTSPPPHP 346
           RSR+SPPP P
Sbjct: 124 RSRSSPPPGP 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,717,963
Number of Sequences: 37544
Number of extensions: 271561
Number of successful extensions: 775
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)