Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_G14
         (557 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29074-1|CAA82315.1|  623|Homo sapiens cytokeratin 9 protein.          30   6.3  
X75015-1|CAA52924.1|  622|Homo sapiens keratin 9 protein.              30   6.3  
S69510-1|AAC60619.1|  622|Homo sapiens cytokeratin 9 protein.          30   6.3  
X76785-2|CAA54180.1|  342|Homo sapiens hypothetical protein prot...    29   8.4  

>Z29074-1|CAA82315.1|  623|Homo sapiens cytokeratin 9 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 6.3
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 342 GRGGVAETCGSAGRPHASN-ICGINERGGDGDFFERFNGASVTSTCSASTGCGAG 503
           GRGG      S+G    S+ +CG   RGG G F   + G S     ++S G G G
Sbjct: 40  GRGGGGRFSSSSGYGGGSSRVCG---RGGGGSFGYSYGGGSGGGFSASSLGGGFG 91


>X75015-1|CAA52924.1|  622|Homo sapiens keratin 9 protein.
          Length = 622

 Score = 29.9 bits (64), Expect = 6.3
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 342 GRGGVAETCGSAGRPHASN-ICGINERGGDGDFFERFNGASVTSTCSASTGCGAG 503
           GRGG      S+G    S+ +CG   RGG G F   + G S     ++S G G G
Sbjct: 39  GRGGGGRFSSSSGYGGGSSRVCG---RGGGGSFGYSYGGGSGGGFSASSLGGGFG 90


>S69510-1|AAC60619.1|  622|Homo sapiens cytokeratin 9 protein.
          Length = 622

 Score = 29.9 bits (64), Expect = 6.3
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 342 GRGGVAETCGSAGRPHASN-ICGINERGGDGDFFERFNGASVTSTCSASTGCGAG 503
           GRGG      S+G    S+ +CG   RGG G F   + G S     ++S G G G
Sbjct: 39  GRGGGGRFSSSSGYGGGSSRVCG---RGGGGSFGYSYGGGSGGGFSASSLGGGFG 90


>X76785-2|CAA54180.1|  342|Homo sapiens hypothetical protein
           protein.
          Length = 342

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 82  HYYINNQMTEHAHIRTLQYTHKHTAT 159
           H + N Q   HAH  TL + H HT T
Sbjct: 125 HSHTNTQKHTHAHSHTLSHCHIHTHT 150


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,077,917
Number of Sequences: 237096
Number of extensions: 1338076
Number of successful extensions: 3273
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3259
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5590411794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)