Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_G13
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    28   0.89 
SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   0.89 
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo...    27   1.2  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    27   1.6  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    25   4.7  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    25   4.7  
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   4.7  
SPCC576.07 |ret3||coatomer zeta subunit |Schizosaccharomyces pom...    25   4.7  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.3  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    25   6.3  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    25   8.3  
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    25   8.3  

>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 551

 Score = 27.9 bits (59), Expect = 0.89
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 42  ERDAFDALFEHAPDKLQVVNKSLITFVNKHLGKLHLEVM 158
           ++D    L E AP  L +  KSLIT+       L++++M
Sbjct: 289 QKDIHVTLIEAAPGVLPMFTKSLITYTENLFKNLNIKIM 327


>SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 105

 Score = 27.9 bits (59), Expect = 0.89
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
 Frame = -1

Query: 415 FLYLVNRLYKTLRVDFKSRFTISS-----GRAFGLARPTSCINSNAKVTLWTFWSKS 260
           F+Y++ + ++  + D    F + S     GR+ G    T C++SN    +++ W+KS
Sbjct: 35  FIYIIKKQHR--QADLPRNFGMRSKALYIGRSVGKWIETFCLDSNYSTHVYSLWAKS 89


>SPAC3A12.17c |cys12|cys1b|cysteine synthase
           Cys12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 10/16 (62%), Positives = 15/16 (93%)
 Frame = -1

Query: 421 AIFLYLVNRLYKTLRV 374
           A+F+YL+ RLY++LRV
Sbjct: 16  AVFMYLLRRLYESLRV 31


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 81  DKLQVVNKSLITFVNKHLGKLHLEVMDLETQFHDGVYLCLLMGLLEG 221
           D L+ +   L+   N H+ +     + L   F  G YLCL+M    G
Sbjct: 565 DSLKKIKGLLLEKRNMHIQRYGPNTVKLYYAFDSGDYLCLVMDYFNG 611


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 222 FFVPLYDFHLTPQDFD 269
           FF+ L+D+  TP+DFD
Sbjct: 238 FFLYLHDYGSTPEDFD 253


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -1

Query: 463  YINSN*SNVQTNF*AIFLYLVNRLYKTLRVDFKSRFTISSGRAFGL 326
            +I+ N   V TN    FLY  +  ++ +RV+      + S   FG+
Sbjct: 1103 FISENDIRVDTNHRIWFLYFSSNRWQAIRVEAIGALVVFSSAFFGV 1148


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 400 NRLYKTLRVDFKSRFTISSGRAFGLARPTSCINSNAKV 287
           ++L KTL V F +   +S+G    +     C++SN K+
Sbjct: 13  SKLQKTLGVVFPAAILLSTGYTVWVFIALICVDSNIKI 50


>SPCC576.07 |ret3||coatomer zeta subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 190

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 36  RSERDAFDALFEHAPDK 86
           RS RDA + LF++ PDK
Sbjct: 99  RSIRDALELLFKYVPDK 115


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 225  FVPLYDFHLTPQDFDQKVHNVTFA 296
            F   +DF LTP  F + +H V+F+
Sbjct: 2057 FETTFDFVLTPAAFSRFLHRVSFS 2080


>SPAC6C3.06c |||P-type ATPase, calcium
            transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/60 (20%), Positives = 31/60 (51%)
 Frame = +3

Query: 138  KLHLEVMDLETQFHDGVYLCLLMGLLEGFFVPLYDFHLTPQDFDQKVHNVTFAFELMQEV 317
            +L+ E+ + +   +     C+L+ + +G  + L+ F+L   + + K+  V F+  +  E+
Sbjct: 893  ELYKEMREQKCFSYKNFISCVLISVYQGLIIQLFTFYLIGFEEEGKMLAVCFSCLIFNEL 952


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 229 TKNPSSSPISRHRYTPSWNCVSRSITS 149
           T  PSSSP S   Y+P  +  S SI S
Sbjct: 282 TSPPSSSPNSDDAYSPQVDSYSPSINS 308


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -2

Query: 465 NILIAIKAMYRQTFKLY 415
           N L+ +KA+Y+Q F+++
Sbjct: 170 NFLVIVKAIYKQMFRIF 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,357,793
Number of Sequences: 5004
Number of extensions: 25964
Number of successful extensions: 89
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)