Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_G13
         (496 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0603 - 19890664-19890823,19891104-19891329,19891498-198916...    38   0.006
06_03_1393 + 29846884-29847465                                         28   3.6  
12_01_0590 - 4813764-4814401,4814785-4814872,4815176-4815376,481...    28   4.7  
05_01_0361 - 2824728-2826043,2826288-2826507,2827616-2827702,282...    27   6.3  
02_03_0146 + 15720790-15721194,15721350-15721446,15721663-157219...    27   6.3  
09_02_0052 - 3616013-3616033,3616116-3616514,3617925-3618094,361...    27   8.3  
02_01_0174 - 1193696-1193726,1193822-1194175,1194307-1194542,119...    27   8.3  

>07_03_0603 -
           19890664-19890823,19891104-19891329,19891498-19891636,
           19891849-19891942,19892291-19892311,19892506-19892941,
           19893133-19893280,19893369-19893476,19893543-19893659,
           19893960-19894016,19894488-19894553,19895140-19895328,
           19895410-19895523,19895684-19895766,19895857-19896322,
           19896832-19897476
          Length = 1022

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
 Frame = +3

Query: 132 LGKLHLEVMDLETQFHDGVYLCLLMGLLEGFFVPLYDFHLTPQDFDQKVHNVTFAFELMQ 311
           L +    V +L     DG+ LC ++ LL      +         + +++HN T A + ++
Sbjct: 401 LSEYDFTVGNLFEDLQDGIILCRIIQLLTSDASIILKVIAPSDTYKKRLHNCTMAIQYIK 460

Query: 312 EVGLAKPKA-----RPEDIVNLDLKSTLRVLYNLF 401
           + G     A       EDIVN D +  L +L+N+F
Sbjct: 461 QAGFPLSDADGLSISAEDIVNGDKELILALLWNMF 495


>06_03_1393 + 29846884-29847465
          Length = 193

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 19/57 (33%), Positives = 23/57 (40%)
 Frame = +2

Query: 173 VPRRSVPVPADGXXXXXXXXXXXXPPHSSGFRPEGPQRDLRVRVDARSRSG*TEGAP 343
           +PR S   P+              PP SSG +P G +  LR R  AR     T  AP
Sbjct: 29  IPRASSGDPSPTAADAPTDAQSATPP-SSGAKPTGVKNRLRARNQARRVQEFTPPAP 84


>12_01_0590 -
           4813764-4814401,4814785-4814872,4815176-4815376,
           4816803-4816830,4817136-4817339,4817352-4819136,
           4820358-4821139
          Length = 1241

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 63  LFEHAPDKLQVVNKSLITFVNKHLGKLHLE 152
           L +H P  LQV   S ++   +HL KLHLE
Sbjct: 723 LLKHFPSWLQVDGLSTLSPPPRHLWKLHLE 752


>05_01_0361 -
           2824728-2826043,2826288-2826507,2827616-2827702,
           2827726-2827980,2828704-2828733
          Length = 635

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 232 GTKNPSSSPISRHRYTPSWNCVSRSITSRCSLPRC 128
           GT+ P + P S ++  P W  ++ S+T R ++P C
Sbjct: 549 GTRMPVNLPSSLYQQRPPW--LAASVTIRTTIPVC 581


>02_03_0146 +
           15720790-15721194,15721350-15721446,15721663-15721928,
           15721997-15722437
          Length = 402

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +3

Query: 12  TSYEELGARSERDAFDALFEHAPDKLQVVNKSLITFVNKHLGKLHLEVMDLE 167
           T  EE G   E   + ALFE   +   V+   + T  +K + ++ + +MDL+
Sbjct: 163 TQLEEEGIPDEMKGYQALFEVGSNLGVVMEVDMPTITSKDVVRMKIGMMDLK 214


>09_02_0052 -
           3616013-3616033,3616116-3616514,3617925-3618094,
           3619691-3620732
          Length = 543

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +3

Query: 39  SERDAFDALFEHAPDKLQVVNKSLITFVNKHLGKLHLEVMDLETQFH 179
           S+ ++  AL E    KLQ++ ++     ++    L+L+   LE  FH
Sbjct: 2   SDMESMTALMESTGSKLQLLQRAFAELESQSAVSLNLKWKQLEDHFH 48


>02_01_0174 -
           1193696-1193726,1193822-1194175,1194307-1194542,
           1194629-1194741,1195963-1196161,1196427-1196513
          Length = 339

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 276 VHNVTFAFELMQEVGLAKPKARPEDIVNLDLKSTLRVLYNLFTKYKNI 419
           +H VT  F  +    +A PK RP    NLD  +    +  LF+KY  +
Sbjct: 41  LHKVTVRFTGIGLRRVACPKMRPVFCGNLDYDARQSEIERLFSKYGRV 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,592,060
Number of Sequences: 37544
Number of extensions: 162434
Number of successful extensions: 395
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)