Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_G12
         (395 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1004 + 23244479-23244648,23245104-23245276,23245535-232456...    28   2.4  
12_02_0679 - 21870084-21870689,21870780-21870977                       27   5.5  
12_02_0026 - 12423191-12423204,12423344-12423408,12423805-124238...    26   9.6  

>07_03_1004 +
           23244479-23244648,23245104-23245276,23245535-23245638,
           23245849-23246037,23246508-23248076
          Length = 734

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +1

Query: 274 VSNLAASPDHHISTGTVSTMGGLSDSADADRFIQSCR 384
           +S  A+SP HHISTG       LSD       +  CR
Sbjct: 30  LSQQASSPLHHISTGIFQLRAHLSDQVSVSA-LDLCR 65


>12_02_0679 - 21870084-21870689,21870780-21870977
          Length = 267

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 1   ARGCLVLIHKCCRAVIIIWNEIS*NIKNISY-*VPKYF*F 117
           +  C  L+  CC   + +W  +  NIK + +  + KYF F
Sbjct: 147 SNACGTLVRTCCPINVKLWETVDDNIKTLLWNELQKYFVF 186


>12_02_0026 -
           12423191-12423204,12423344-12423408,12423805-12423875,
           12424588-12424663,12425714-12425794,12425989-12426050
          Length = 122

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
 Frame = +2

Query: 86  FHIRYLNIFSSYILDKFVYGSLWLRNKI---IGNGVENQQ 196
           +++ +LN   +YI  + VYG   +R+++   IGNG +++Q
Sbjct: 18  YNVLHLNQDLAYIFRQEVYGEAVVRSQVPPLIGNGCKHRQ 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,402,463
Number of Sequences: 37544
Number of extensions: 161418
Number of successful extensions: 321
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)