Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_G12
         (395 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S75768-1|AAD14188.1|  595|Homo sapiens CD30 antigen protein.           29   4.2  
M83554-1|AAA51947.1|  595|Homo sapiens CD30 antigen protein.           29   4.2  
AY498860-1|AAR32099.1|  595|Homo sapiens tumor necrosis factor r...    29   4.2  
AL357835-1|CAH73719.1|  595|Homo sapiens tumor necrosis factor r...    29   4.2  
AJ289159-1|CAC16652.1|  595|Homo sapiens cytokine receptor CD30 ...    29   4.2  
BC053361-1|AAH53361.1|  460|Homo sapiens zinc finger protein 384...    28   9.7  
AK095734-1|BAC04618.1|  515|Homo sapiens NA.  protein.                 28   9.7  
AB070238-1|BAB85125.1|  576|Homo sapiens nuclear matrix transcri...    28   9.7  

>S75768-1|AAD14188.1|  595|Homo sapiens CD30 antigen protein.
          Length = 595

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 256 KLDPENVSNLAASPDHHISTGTVSTMGGLSDSADADRFIQSCRRQC 393
           +L  E  S L  +PD   S G  S+  GLS +         CR+QC
Sbjct: 199 RLAQEAASKLTRAPDSPSSVGRPSSDPGLSPTQPCPEGSGDCRKQC 244


>M83554-1|AAA51947.1|  595|Homo sapiens CD30 antigen protein.
          Length = 595

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 256 KLDPENVSNLAASPDHHISTGTVSTMGGLSDSADADRFIQSCRRQC 393
           +L  E  S L  +PD   S G  S+  GLS +         CR+QC
Sbjct: 199 RLAQEAASKLTRAPDSPSSVGRPSSDPGLSPTQPCPEGSGDCRKQC 244


>AY498860-1|AAR32099.1|  595|Homo sapiens tumor necrosis factor
           receptor superfamily, member 8 protein.
          Length = 595

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 256 KLDPENVSNLAASPDHHISTGTVSTMGGLSDSADADRFIQSCRRQC 393
           +L  E  S L  +PD   S G  S+  GLS +         CR+QC
Sbjct: 199 RLAQEAASKLTRAPDSPSSVGRPSSDPGLSPTQPCPEGSGDCRKQC 244


>AL357835-1|CAH73719.1|  595|Homo sapiens tumor necrosis factor
           receptor superfamily, member 8 protein.
          Length = 595

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 256 KLDPENVSNLAASPDHHISTGTVSTMGGLSDSADADRFIQSCRRQC 393
           +L  E  S L  +PD   S G  S+  GLS +         CR+QC
Sbjct: 199 RLAQEAASKLTRAPDSPSSVGRPSSDPGLSPTQPCPEGSGDCRKQC 244


>AJ289159-1|CAC16652.1|  595|Homo sapiens cytokine receptor CD30
           protein.
          Length = 595

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 256 KLDPENVSNLAASPDHHISTGTVSTMGGLSDSADADRFIQSCRRQC 393
           +L  E  S L  +PD   S G  S+  GLS +         CR+QC
Sbjct: 199 RLAQEAASKLTRAPDSPSSVGRPSSDPGLSPTQPCPEGSGDCRKQC 244


>BC053361-1|AAH53361.1|  460|Homo sapiens zinc finger protein 384
           protein.
          Length = 460

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +3

Query: 216 YHKN*IEIY*-SHRETRPRKCVQ-SGRFT*SSYIYWHC-VHYG 335
           Y K+ ++I+  SH ET+P KC   S  F  SSY+  H  +H G
Sbjct: 183 YSKSEMQIHSKSHTETKPHKCPHCSKTFANSSYLAQHIRIHSG 225


>AK095734-1|BAC04618.1|  515|Homo sapiens NA.  protein.
          Length = 515

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +3

Query: 216 YHKN*IEIY*-SHRETRPRKCVQ-SGRFT*SSYIYWHC-VHYG 335
           Y K+ ++I+  SH ET+P KC   S  F  SSY+  H  +H G
Sbjct: 238 YSKSEMQIHSKSHTETKPHKCPHCSKTFANSSYLAQHIRIHSG 280


>AB070238-1|BAB85125.1|  576|Homo sapiens nuclear matrix
           transcription factor4 protein.
          Length = 576

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +3

Query: 216 YHKN*IEIY*-SHRETRPRKCVQ-SGRFT*SSYIYWHC-VHYG 335
           Y K+ ++I+  SH ET+P KC   S  F  SSY+  H  +H G
Sbjct: 238 YSKSEMQIHSKSHTETKPHKCPHCSKTFANSSYLAQHIRIHSG 280


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,780,630
Number of Sequences: 237096
Number of extensions: 887360
Number of successful extensions: 1822
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1822
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2813442310
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)