Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_G12
         (395 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39645-2|AAA80365.2|  638|Caenorhabditis elegans Hypothetical pr...    27   3.7  
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu...    26   8.5  
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.      26   8.5  
AL117203-21|CAN86632.1|  171|Caenorhabditis elegans Hypothetical...    26   8.5  
AL117203-20|CAB55118.1|  244|Caenorhabditis elegans Hypothetical...    26   8.5  

>U39645-2|AAA80365.2|  638|Caenorhabditis elegans Hypothetical
           protein C14F11.2 protein.
          Length = 638

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 20/44 (45%), Positives = 27/44 (61%)
 Frame = +1

Query: 256 KLDPENVSNLAASPDHHISTGTVSTMGGLSDSADADRFIQSCRR 387
           KL PE++S LA+S D  I+T T S M       + DRF+Q CR+
Sbjct: 560 KLHPESIS-LASSTDSSIAT-TRSKM-------NVDRFLQYCRK 594


>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
            guidance protein 2,isoform a protein.
          Length = 2886

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 322  QCQ*IYDDQVKRPDWTHFRGLVSL 251
            QC   YD  V + +W +F G++SL
Sbjct: 1981 QCLAKYDKMVGQLEWKNFNGIISL 2004


>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
          Length = 2914

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 322  QCQ*IYDDQVKRPDWTHFRGLVSL 251
            QC   YD  V + +W +F G++SL
Sbjct: 2009 QCLAKYDKMVGQLEWKNFNGIISL 2032


>AL117203-21|CAN86632.1|  171|Caenorhabditis elegans Hypothetical
           protein Y48C3A.18b protein.
          Length = 171

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 326 PLWVVCQTVPTLTALFNPAVVNV 394
           P+ ++ + +P L A FNP VVNV
Sbjct: 21  PVTLMFERLPCLPAEFNPGVVNV 43


>AL117203-20|CAB55118.1|  244|Caenorhabditis elegans Hypothetical
           protein Y48C3A.18a protein.
          Length = 244

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 326 PLWVVCQTVPTLTALFNPAVVNV 394
           P+ ++ + +P L A FNP VVNV
Sbjct: 94  PVTLMFERLPCLPAEFNPGVVNV 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,428,859
Number of Sequences: 27780
Number of extensions: 153830
Number of successful extensions: 357
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)