Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_G11
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   262   2e-71
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   262   3e-71
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    26   3.9  
SPAC4A8.04 |isp6|prb1|vacuolar serine protease Isp6|Schizosaccha...    26   5.1  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    25   6.8  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  262 bits (643), Expect = 2e-71
 Identities = 126/187 (67%), Positives = 149/187 (79%), Gaps = 1/187 (0%)
 Frame = +3

Query: 21  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 200
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 201 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 380
           FPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL IV++G Q+
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQD 120

Query: 381 IPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKR-LLPAKEGNENAKPRYNAPK 557
           IPGLTD  VP+RLGPKRASKIR+ FNL KEDDVR++V++R ++P KEG    KP   APK
Sbjct: 121 IPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPK 177

Query: 558 IQRLVTP 578
           IQRLVTP
Sbjct: 178 IQRLVTP 184


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  262 bits (642), Expect = 3e-71
 Identities = 125/187 (66%), Positives = 149/187 (79%), Gaps = 1/187 (0%)
 Frame = +3

Query: 21  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 200
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 201 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 380
           FPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL I+++G Q+
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQD 120

Query: 381 IPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKR-LLPAKEGNENAKPRYNAPK 557
           IPGLTD  VP+RLGPKRASKIR+ FNL KEDDVR++V++R ++P KEG    KP   APK
Sbjct: 121 IPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPK 177

Query: 558 IQRLVTP 578
           IQRLVTP
Sbjct: 178 IQRLVTP 184


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 265 EWPFDIKRRTRLLVRTPCFIGKPCLSLP 182
           EWP  +K   +LLVRT  +   PC + P
Sbjct: 26  EWPLLLKNFDKLLVRTGHYTPIPCGNNP 53


>SPAC4A8.04 |isp6|prb1|vacuolar serine protease
           Isp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = -3

Query: 612 GLDDDVCAAEQPVLLASGF*AHCIWVSHFH 523
           GLD       QP L    F AH  WVS  H
Sbjct: 81  GLDSHYIIVLQPDLSEQEFQAHTNWVSEMH 110


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
 Frame = -2

Query: 526 SLPSLAGKXXXXXXXXXXXXXFKLNNLRILDARL-GPRRRGTSPSVSPGISCAPLRTMTR 350
           SLPS+ G+                N  + ++  +  P ++ TSP  +   + AP+   + 
Sbjct: 35  SLPSILGEKSEVSKPFKPAVTDPSNAKKEINMAIESPSKKATSPKKATPAAVAPVEATSA 94

Query: 349 AKTERLASTMQP 314
             T    ++M P
Sbjct: 95  VDTSEAVASMTP 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,465,299
Number of Sequences: 5004
Number of extensions: 48692
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)