Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_G11
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   262   2e-70
U00065-7|AAL02474.1| 1090|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U00065-6|AAL02472.1| 1051|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U00058-2|AAL02528.2|  832|Caenorhabditis elegans Hypothetical pr...    28   4.8  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  262 bits (641), Expect = 2e-70
 Identities = 126/186 (67%), Positives = 147/186 (79%)
 Frame = +3

Query: 21  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 200
           M+LN +YPATG QK FEV +E KLR+F+EKRM  EV  D LGDEWKGYV+R+ GGNDKQG
Sbjct: 1   MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQG 60

Query: 201 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 380
           FPMKQG+LTN RVRLL+ KG SCYR R++GERKRKSVRGCIVDAN+S L+LVIV+KG  E
Sbjct: 61  FPMKQGILTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGE 120

Query: 381 IPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGNENAKPRYNAPKI 560
           I GLTD  +PR+LGPKRASKIRKLFNL K DDV +YV+       +G      +  APKI
Sbjct: 121 IEGLTDSVLPRKLGPKRASKIRKLFNLTKHDDVTKYVITHDKTFPDG----VTKTIAPKI 176

Query: 561 QRLVTP 578
           QRL+TP
Sbjct: 177 QRLITP 182


>U00065-7|AAL02474.1| 1090|Caenorhabditis elegans Hypothetical
           protein D1044.2c protein.
          Length = 1090

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 22/72 (30%), Positives = 28/72 (38%)
 Frame = +2

Query: 359 CPQRCTGNSWTDXXXXXXXXXXQACV*NPQIIQFKKRRRCASLCCKTPFTCQRGQ*KCET 538
           C Q C+   W              C  +P  I    +R CA+  C     CQ  Q KC T
Sbjct: 316 CDQECSNGEWGPDCAYCCHCSEGTC--HP--ISGDCQRGCAT--CWDGVACQTRQEKCAT 369

Query: 539 QIQCA*NPEASN 574
           + QCA N  + N
Sbjct: 370 KTQCASNALSFN 381


>U00065-6|AAL02472.1| 1051|Caenorhabditis elegans Hypothetical
           protein D1044.2a protein.
          Length = 1051

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 22/72 (30%), Positives = 28/72 (38%)
 Frame = +2

Query: 359 CPQRCTGNSWTDXXXXXXXXXXQACV*NPQIIQFKKRRRCASLCCKTPFTCQRGQ*KCET 538
           C Q C+   W              C  +P  I    +R CA+  C     CQ  Q KC T
Sbjct: 316 CDQECSNGEWGPDCAYCCHCSEGTC--HP--ISGDCQRGCAT--CWDGVACQTRQEKCAT 369

Query: 539 QIQCA*NPEASN 574
           + QCA N  + N
Sbjct: 370 KTQCASNALSFN 381


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = -2

Query: 421 PRRRGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDLRFLSPSRRGL*QEWPFDIKR 242
           P    T+P+ +P  +  P  T T AKT + ++T   +T     +P+      + PFD  +
Sbjct: 269 PTTTTTTPTTTPTTTTTPTTTTTTAKTTK-STTTTTKTTKTTSTPTTTTTTPKTPFDTSK 327

Query: 241 RT 236
            T
Sbjct: 328 CT 329


>U00058-2|AAL02528.2|  832|Caenorhabditis elegans Hypothetical
           protein W03A5.1 protein.
          Length = 832

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 468 EDDVRRYVVKRLLPAKEGNENAKPRYNAPKIQRL 569
           +DD RRY  K L    +   N KPRY   K   +
Sbjct: 276 DDDGRRYFCKLLKQIAQKTANPKPRYKLSKCSHI 309


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,019,095
Number of Sequences: 27780
Number of extensions: 296889
Number of successful extensions: 780
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)