Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_G10
(553 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S... 268 4e-73
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac... 268 4e-73
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 30 0.26
SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|... 29 0.34
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 28 1.1
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po... 27 2.4
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 25 5.6
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 25 5.6
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc... 25 7.4
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 25 7.4
SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr 1... 25 7.4
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc... 25 9.8
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar... 25 9.8
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 25 9.8
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 25 9.8
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 25 9.8
>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
L11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 268 bits (657), Expect = 4e-73
Identities = 122/164 (74%), Positives = 141/164 (85%)
Frame = +3
Query: 57 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 236
M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKARYT+R FGIRRNEKIA H
Sbjct: 9 MKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRNEKIACH 68
Query: 237 CTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFY 416
TVRG KAEEILERGLKV+EYEL++ NFSATGNFGFGIQEHIDLGIKYDPSIGIYG+DFY
Sbjct: 69 VTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDFY 128
Query: 417 VVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDGIIL 548
VV+ RPG VA R+ + G+VG+ H++ ED + WF+QKYD ++L
Sbjct: 129 VVMDRPGMRVARRKAQRGRVGYTHKINAEDTINWFKQKYDAVVL 172
>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
L11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 174
Score = 268 bits (657), Expect = 4e-73
Identities = 122/164 (74%), Positives = 141/164 (85%)
Frame = +3
Query: 57 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 236
M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKARYT+R FGIRRNEKIA H
Sbjct: 9 MKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRNEKIACH 68
Query: 237 CTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFY 416
TVRG KAEEILERGLKV+EYEL++ NFSATGNFGFGIQEHIDLGIKYDPSIGIYG+DFY
Sbjct: 69 VTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDFY 128
Query: 417 VVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDGIIL 548
VV+ RPG VA R+ + G+VG+ H++ ED + WF+QKYD ++L
Sbjct: 129 VVMDRPGMRVARRKAQRGRVGYTHKINAEDTINWFKQKYDAVVL 172
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 29.9 bits (64), Expect = 0.26
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = -3
Query: 521 KPLHGVFFCQTMGESNFASLTSSMSYIETWSTKNNVEIQTIDTNRWIIFDTQID 360
KP + + Q G+ + S S Y+ + + NVE ++ID + I+FD +D
Sbjct: 708 KPTYAQYLEQLWGDMSDFSTHLSFYYLCSINLMENVEEESIDKIKDILFDIHVD 761
>SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 270
Score = 29.5 bits (63), Expect = 0.34
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = -1
Query: 373 IPKSMCSWIPKPKLPVAEKLSRLNSYSLTFNPLSRISSALAPRTVQWTAIFSLRRIPKD 197
I S+C WI LP+ +K + + FNP+S + L +FS + P D
Sbjct: 81 IDPSICKWILDTYLPLFKKSNNAYPSKIAFNPISNTTLVLFLTECCNIYLFSENKKPVD 139
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 27.9 bits (59), Expect = 1.1
Identities = 18/77 (23%), Positives = 33/77 (42%)
Frame = -3
Query: 329 CGREVITSQFIFSYFQSSLKDFLSLSTSNSAMDSNLFITTNTKRPYSVSGL*EYRLLAGK 150
CG E I QF + + D ++S+ N+A+D I + +S ++ + A
Sbjct: 603 CGTETIIRQFAMNLVMTVTNDKQAVSSKNAALDLISLIVNKVLALFDLSLFEKHNIPAPT 662
Query: 149 LFQHLSGTS*PITRFSD 99
F + ITR ++
Sbjct: 663 NFNDIISFIPSITRLNE 679
>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 26.6 bits (56), Expect = 2.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 551 VQDYTIVFLLKPLHGVFFCQTMGE 480
+ D+ + LL+PL VF C T G+
Sbjct: 40 MDDFNLENLLRPLQCVFICSTTGQ 63
>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = +3
Query: 69 HIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 212
H++ + N +G A K+ +QLTG+ R GIR
Sbjct: 604 HLQNISNNYMIGAINAENGEANKLKDQLTGEYKTVPNVAIDYRDHGIR 651
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.4 bits (53), Expect = 5.6
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = -1
Query: 517 HFMASSFVKRWGNPTLPVL-RLL*ATLKPGRPRTT*KSKP 401
++ ASSF ++ N T P+ ++ A+LKP PRT+ S P
Sbjct: 131 NYSASSFERQ--NRTAPLQSKVTTASLKPNIPRTSMSSSP 168
>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 517
Score = 25.0 bits (52), Expect = 7.4
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +2
Query: 392 WYLWFGFLRCSWSTRF 439
W WFGF SW F
Sbjct: 242 WKRWFGFKSVSWKNSF 257
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 25.0 bits (52), Expect = 7.4
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Frame = -1
Query: 355 SWIPKPKLPVAEKLSRLNS-YSLTFNPLSRISSALAPRTVQWTAIFSLRRIPKDLTVYLA 179
S+ K P S L+S + T L R + L+ T++ A+ L PKD+T+
Sbjct: 186 SYRTKSASPALIDTSTLDSRLNFTMGRLERSIAQLSKNTMR--AVSHLENPPKDITLPKL 243
Query: 178 FENTGCWPVSCSSTLAARVSLSPDS 104
WP+ S A S S
Sbjct: 244 NVKNSAWPLQPYSPPANETPASSSS 268
>SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 283
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -3
Query: 434 WSTKNNVEIQTID-TNRWIIFDTQIDVFL 351
W+ +E+ D +NRW+ F+ +DVFL
Sbjct: 88 WNKGECIELVLRDASNRWLPFEFVMDVFL 116
>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 536
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 240 TVRGAKAEEILERGLKVREYE 302
T+ G KA+ RGL++R YE
Sbjct: 432 TLEGHKAKSRSTRGLRIRSYE 452
>SPCC1393.08 |||transcription factor, zf-GATA type
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 431 STKNNVEIQTIDTNRWIIFDT 369
ST+NN ++QT + RW + D+
Sbjct: 92 STENNQKLQTNPSARWSLLDS 112
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 249 LEQCNGQQSFHYDEYQKT 196
LE CN ++S H D+ KT
Sbjct: 371 LEDCNTKESIHIDDILKT 388
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 24.6 bits (51), Expect = 9.8
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 305 QFIFSYFQSSLKDFLSLSTSNSAMD-SNLFIT 213
Q F YFQ+S + L+L N+ + S +FIT
Sbjct: 414 QSFFEYFQASCRHTLNLLDENANYNFSKIFIT 445
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 287 FQSSLKDFLSLSTSNSAMDSNLFITTNTKRPYSVS 183
F+ L L+ STS + S + N RPY++S
Sbjct: 312 FRDRLTQILTPSTSLDLLHSIRSVRKNENRPYTIS 346
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,441,802
Number of Sequences: 5004
Number of extensions: 53678
Number of successful extensions: 167
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -