Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_G09
(564 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132876-13|CAD21665.1| 117|Caenorhabditis elegans Hypothetical... 175 1e-44
AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosenso... 29 2.3
AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosenso... 29 2.3
AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensor... 29 2.3
AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensor... 29 2.3
AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensor... 29 2.3
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor... 29 2.3
AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensor... 29 2.3
AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical ... 29 2.3
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr... 28 4.0
AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical ... 28 4.0
Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical pr... 28 5.3
AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ... 28 5.3
AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical ... 28 5.3
U41021-7|AAL02487.1| 680|Caenorhabditis elegans Hypothetical pr... 27 9.3
U41021-6|AAL02488.1| 713|Caenorhabditis elegans Hypothetical pr... 27 9.3
AF038609-2|AAK29794.1| 226|Caenorhabditis elegans Hypothetical ... 27 9.3
AF038609-1|AAO61425.1| 234|Caenorhabditis elegans Hypothetical ... 27 9.3
AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical ... 27 9.3
AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical ... 27 9.3
>AL132876-13|CAD21665.1| 117|Caenorhabditis elegans Hypothetical
protein Y105E8A.16 protein.
Length = 117
Score = 175 bits (427), Expect = 1e-44
Identities = 78/101 (77%), Positives = 95/101 (94%)
Frame = -2
Query: 392 HRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRITTRKTPCGEGSKTW 213
HRIR+TLTS+NV+ LEKVC+ LI+GAK + L VKGP+RMPTKVLRITTRKTPCGEGSKTW
Sbjct: 17 HRIRLTLTSQNVKPLEKVCAQLIDGAKNEHLIVKGPIRMPTKVLRITTRKTPCGEGSKTW 76
Query: 212 DRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 90
DRFQMRIHKR+I+LH+P+E+++QITSI+IEPGV++EVT AD
Sbjct: 77 DRFQMRIHKRLINLHAPAEVLRQITSISIEPGVDIEVTRAD 117
>AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform g protein.
Length = 1604
Score = 29.1 bits (62), Expect = 2.3
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 4/118 (3%)
Frame = -2
Query: 554 HQCPALETKLYSGSALSNF*FESCLSRPEYRNNMAAAVVSGKDIEKPQAEISPIHRIRIT 375
H+ P + +Y G+ S E S E ++ + S A ISP HR ++
Sbjct: 759 HKFPT-DMPMYGGAQSSEVSAEILPSPQEENSSKETSSSSSSSSSSNTAHISPEHRFKVD 817
Query: 374 LTSR--NVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRI--TTRKTPCGEGSKTW 213
L + +V+ + DL A Q V+ PV + L + + PCG+G K+W
Sbjct: 818 LDQKFADVKREHEGREDL---AYSQ--MVQHPVTVSADCLEVYNASLSKPCGDG-KSW 869
>AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform f protein.
Length = 1818
Score = 29.1 bits (62), Expect = 2.3
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 4/118 (3%)
Frame = -2
Query: 554 HQCPALETKLYSGSALSNF*FESCLSRPEYRNNMAAAVVSGKDIEKPQAEISPIHRIRIT 375
H+ P + +Y G+ S E S E ++ + S A ISP HR ++
Sbjct: 973 HKFPT-DMPMYGGAQSSEVSAEILPSPQEENSSKETSSSSSSSSSSNTAHISPEHRFKVD 1031
Query: 374 LTSR--NVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRI--TTRKTPCGEGSKTW 213
L + +V+ + DL A Q V+ PV + L + + PCG+G K+W
Sbjct: 1032 LDQKFADVKREHEGREDL---AYSQ--MVQHPVTVSADCLEVYNASLSKPCGDG-KSW 1083
>AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform e protein.
Length = 1954
Score = 29.1 bits (62), Expect = 2.3
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 4/118 (3%)
Frame = -2
Query: 554 HQCPALETKLYSGSALSNF*FESCLSRPEYRNNMAAAVVSGKDIEKPQAEISPIHRIRIT 375
H+ P + +Y G+ S E S E ++ + S A ISP HR ++
Sbjct: 1109 HKFPT-DMPMYGGAQSSEVSAEILPSPQEENSSKETSSSSSSSSSSNTAHISPEHRFKVD 1167
Query: 374 LTSR--NVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRI--TTRKTPCGEGSKTW 213
L + +V+ + DL A Q V+ PV + L + + PCG+G K+W
Sbjct: 1168 LDQKFADVKREHEGREDL---AYSQ--MVQHPVTVSADCLEVYNASLSKPCGDG-KSW 1219
>AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform b protein.
Length = 1685
Score = 29.1 bits (62), Expect = 2.3
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 4/118 (3%)
Frame = -2
Query: 554 HQCPALETKLYSGSALSNF*FESCLSRPEYRNNMAAAVVSGKDIEKPQAEISPIHRIRIT 375
H+ P + +Y G+ S E S E ++ + S A ISP HR ++
Sbjct: 1158 HKFPT-DMPMYGGAQSSEVSAEILPSPQEENSSKETSSSSSSSSSSNTAHISPEHRFKVD 1216
Query: 374 LTSR--NVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRI--TTRKTPCGEGSKTW 213
L + +V+ + DL A Q V+ PV + L + + PCG+G K+W
Sbjct: 1217 LDQKFADVKREHEGREDL---AYSQ--MVQHPVTVSADCLEVYNASLSKPCGDG-KSW 1268
>AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform d protein.
Length = 1995
Score = 29.1 bits (62), Expect = 2.3
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 4/118 (3%)
Frame = -2
Query: 554 HQCPALETKLYSGSALSNF*FESCLSRPEYRNNMAAAVVSGKDIEKPQAEISPIHRIRIT 375
H+ P + +Y G+ S E S E ++ + S A ISP HR ++
Sbjct: 1150 HKFPT-DMPMYGGAQSSEVSAEILPSPQEENSSKETSSSSSSSSSSNTAHISPEHRFKVD 1208
Query: 374 LTSR--NVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRI--TTRKTPCGEGSKTW 213
L + +V+ + DL A Q V+ PV + L + + PCG+G K+W
Sbjct: 1209 LDQKFADVKREHEGREDL---AYSQ--MVQHPVTVSADCLEVYNASLSKPCGDG-KSW 1260
>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform h protein.
Length = 2006
Score = 29.1 bits (62), Expect = 2.3
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 4/118 (3%)
Frame = -2
Query: 554 HQCPALETKLYSGSALSNF*FESCLSRPEYRNNMAAAVVSGKDIEKPQAEISPIHRIRIT 375
H+ P + +Y G+ S E S E ++ + S A ISP HR ++
Sbjct: 1161 HKFPT-DMPMYGGAQSSEVSAEILPSPQEENSSKETSSSSSSSSSSNTAHISPEHRFKVD 1219
Query: 374 LTSR--NVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRI--TTRKTPCGEGSKTW 213
L + +V+ + DL A Q V+ PV + L + + PCG+G K+W
Sbjct: 1220 LDQKFADVKREHEGREDL---AYSQ--MVQHPVTVSADCLEVYNASLSKPCGDG-KSW 1271
>AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform a protein.
Length = 2007
Score = 29.1 bits (62), Expect = 2.3
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 4/118 (3%)
Frame = -2
Query: 554 HQCPALETKLYSGSALSNF*FESCLSRPEYRNNMAAAVVSGKDIEKPQAEISPIHRIRIT 375
H+ P + +Y G+ S E S E ++ + S A ISP HR ++
Sbjct: 1162 HKFPT-DMPMYGGAQSSEVSAEILPSPQEENSSKETSSSSSSSSSSNTAHISPEHRFKVD 1220
Query: 374 LTSR--NVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRI--TTRKTPCGEGSKTW 213
L + +V+ + DL A Q V+ PV + L + + PCG+G K+W
Sbjct: 1221 LDQKFADVKREHEGREDL---AYSQ--MVQHPVTVSADCLEVYNASLSKPCGDG-KSW 1272
>AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical
protein F28B3.1 protein.
Length = 1539
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 419 KPQAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKK 309
+ +A+ SP HRI +TS+N CS L+ A++
Sbjct: 943 RSRAQSSPDHRILTLVTSKNAEQDTATCSTLLKRAER 979
>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
protein H03E18.1 protein.
Length = 1147
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 350 LEKVCSDLINGAKKQKLRVKGPVRMPTKVLRITTRKTPCGE 228
+E V + + G KK+ + K + PTK +T++ P E
Sbjct: 359 VELVTAKTVEGEKKETKKPKSTTKKPTKTAAASTKRPPTTE 399
>AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical
protein Y64G10A.1 protein.
Length = 302
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 452 PCCCDIPVEINNFQIKNCSALNRSTALFQGRGTGG 556
PCC PVEINNF +C+ +S + TGG
Sbjct: 88 PCCNGSPVEINNF--FHCTNATKSAPAKRCCPTGG 120
>Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical protein
F55G11.9 protein.
Length = 1431
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 70 FGSCAYASAMVTSTSTPGSILIEVICFT 153
F S Y +A + +T T GS+L+ V C T
Sbjct: 962 FVSLVYLTASLINTPTKGSLLLYVFCLT 989
>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
protein Y79H2A.3a protein.
Length = 2129
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 221 WNPHRKVFYVL*CGEPWSAFGLDPLHGVFV 310
W + + FY G+PWS+ G P+ G V
Sbjct: 1447 WPGYEEHFYAKNTGKPWSSGGFKPIAGAKV 1476
>AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical
protein C51G7.3 protein.
Length = 754
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 221 WNPHRKVFYVL*CGEPWSAFGLDPLHGVFV 310
W + + FY G+PWS+ G P+ G V
Sbjct: 72 WPGYEEHFYAKNTGKPWSSGGFKPIAGAKV 101
>U41021-7|AAL02487.1| 680|Caenorhabditis elegans Hypothetical
protein F14D12.1a protein.
Length = 680
Score = 27.1 bits (57), Expect = 9.3
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 2/114 (1%)
Frame = -2
Query: 491 ESCLSRPEYRNNMAAAVVS-GKDIEKPQAEISPIHRIRITLTSRNVRSLEKVCSDLINGA 315
ES S E ++ A + +S K P ++P I S+ +L++ S I+
Sbjct: 550 ESMASSSESLSSDARSKISIKKRSNSPPRTVAPC--ILPKQPSQRTLTLQQQSSSSIDSL 607
Query: 314 KK-QKLRVKGPVRMPTKVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSE 156
Q R VR+PT++L + + G K+ F+ ++ + PS+
Sbjct: 608 NSTQTTRTTSSVRLPTRILVNQSSTSSEGSSGKSQHYFESKVGPKTSSTSHPSD 661
>U41021-6|AAL02488.1| 713|Caenorhabditis elegans Hypothetical
protein F14D12.1b protein.
Length = 713
Score = 27.1 bits (57), Expect = 9.3
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 2/114 (1%)
Frame = -2
Query: 491 ESCLSRPEYRNNMAAAVVS-GKDIEKPQAEISPIHRIRITLTSRNVRSLEKVCSDLINGA 315
ES S E ++ A + +S K P ++P I S+ +L++ S I+
Sbjct: 550 ESMASSSESLSSDARSKISIKKRSNSPPRTVAPC--ILPKQPSQRTLTLQQQSSSSIDSL 607
Query: 314 KK-QKLRVKGPVRMPTKVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSE 156
Q R VR+PT++L + + G K+ F+ ++ + PS+
Sbjct: 608 NSTQTTRTTSSVRLPTRILVNQSSTSSEGSSGKSQHYFESKVGPKTSSTSHPSD 661
>AF038609-2|AAK29794.1| 226|Caenorhabditis elegans Hypothetical
protein C54E4.2a protein.
Length = 226
Score = 27.1 bits (57), Expect = 9.3
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -2
Query: 455 MAAAVVSGKDIEKPQAEISPIH 390
++AA +S +D+EKP + P+H
Sbjct: 14 ISAAYISSEDLEKPSSADKPVH 35
>AF038609-1|AAO61425.1| 234|Caenorhabditis elegans Hypothetical
protein C54E4.2b protein.
Length = 234
Score = 27.1 bits (57), Expect = 9.3
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -2
Query: 455 MAAAVVSGKDIEKPQAEISPIH 390
++AA +S +D+EKP + P+H
Sbjct: 14 ISAAYISSEDLEKPSSADKPVH 35
>AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical
protein C44E4.1a protein.
Length = 2712
Score = 27.1 bits (57), Expect = 9.3
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2
Query: 413 QAEISPIHRIRITLTSRNVRSLEKVCSDLINGAK 312
Q+EIS I +IR TL + + K+ SDL G K
Sbjct: 1140 QSEISTIEKIRNTLNGDGYQGMYKLMSDLGLGWK 1173
>AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical
protein C44E4.1c protein.
Length = 2710
Score = 27.1 bits (57), Expect = 9.3
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2
Query: 413 QAEISPIHRIRITLTSRNVRSLEKVCSDLINGAK 312
Q+EIS I +IR TL + + K+ SDL G K
Sbjct: 1140 QSEISTIEKIRNTLNGDGYQGMYKLMSDLGLGWK 1173
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,149,073
Number of Sequences: 27780
Number of extensions: 278514
Number of successful extensions: 796
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -