Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_G07
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.16c |||aromatic ring-opening dioxygenase |Schizosacchar...    86   4e-18
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo...    31   0.18 
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe...    28   1.3  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    27   2.2  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    27   2.9  
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni...    26   3.8  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    26   3.8  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    26   3.8  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    25   6.7  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   8.9  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   8.9  

>SPBC1709.16c |||aromatic ring-opening dioxygenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 285

 Score = 85.8 bits (203), Expect = 4e-18
 Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 3/169 (1%)
 Frame = +2

Query: 17  YTYEYKAPGDPELAERIHESLKSAGIKSK-LDPKRGWDHGVFVPMMLINPSA-DIPIVQV 190
           Y  ++ + G   +A++I  +LK   I +K +   RG DHGVFVP  ++ P   +IP+++V
Sbjct: 100 YQIKFHSKGSKRIADQIISALKEYQIPAKTVSGDRGLDHGVFVPFKIMFPDGLNIPLIEV 159

Query: 191 SVLSNQDAEQHYKLGQVLREFRKEGIAVLGSGMSYHNMREF-MYSRHQGEVVNKEFDDYL 367
           S +   D  Q YK+GQ L+  RKE + V G G++ H   +   ++        KEF   +
Sbjct: 160 S-MHTLDPMQLYKVGQALQSLRKEYLIVSG-GLNIHTFEDLSAFNEDTAADGYKEFQLDI 217

Query: 368 NKICTAENEQDRKEGFISWRQQPGATEAHPVRAAEHFMPLIVIAGAGGT 514
            K    + + DR    +  +  P   +AHP    EHF+PL V AG G +
Sbjct: 218 LKAIETDKQNDRLNKLLGLQLHPYFRKAHP--REEHFVPLYVAAGLGSS 264


>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 500

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -3

Query: 150 IIGTKTPWSQPLFGSSFDLIPALFNDSCI 64
           +IG  TPW+ PL  + + L+PA+ + +C+
Sbjct: 165 VIGVITPWNFPLKMALWKLVPAIASGNCV 193


>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -3

Query: 156 ISIIGTKTPWSQPLFGSSFDLIPALFNDSC--IRSANSGSPGALY 28
           I + G   PW+ PL  + + + PAL   +C  I+SA +     LY
Sbjct: 155 IGVCGQIVPWNYPLNMAGWKIAPALAAGNCIIIKSAETTPLSLLY 199


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +2

Query: 344 NKEFDDY--LNKICTAE-NEQDRKEGFISWRQQP 436
           N  F++Y  + +I  +E NE+ + E F+ WRQ P
Sbjct: 297 NMLFEEYKIVERIVASETNEEGKTEYFVKWRQLP 330


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 493  NNQRHEMFCCPYRVSFGSTRLLPP*YKTFFPILLVLSSTN-FIEIIIKLFIYNLTLVSAI 317
            N   +++ C   R +  S R++    +TF    L L STN    +I+KL + NL     +
Sbjct: 956  NPDENKLLCSIIRTANESKRIIFGFIRTFESQFLTLLSTNDESSLILKLLLNNLKQSGGV 1015

Query: 316  HKL 308
            + L
Sbjct: 1016 YSL 1018


>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
           Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = +2

Query: 359 DYLNKICTAENEQDRKEGFISWRQQPGATEAHPVRAAEHFMPLIVI 496
           + LNK+    + +  +     +  +P    ++P R AEHF P  ++
Sbjct: 84  EILNKVNPEASSEYMERLIARYPARPSINNSYPNRNAEHFFPAYIM 129


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = -3

Query: 285 PDPNTAIPSFLNSRNTCPSL*CCSASWLLRTDT*TIGISAEGLISIIGTKTPWSQPL 115
           P+P+ A P+F NS  + PS    SAS L  T   +      G  S   +    S PL
Sbjct: 378 PNPSVASPAFPNSSTSNPSTAPASASPLASTLKPSTANDTNGSSSSSSSNPRTSSPL 434


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 167 ADIPIVQVSVLSNQDAEQHYKLGQVL 244
           A +P+ ++S    +DA +H+K+GQ L
Sbjct: 604 AFLPVSEMSEAYIRDAREHFKVGQTL 629


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 23/75 (30%), Positives = 32/75 (42%)
 Frame = +2

Query: 341 VNKEFDDYLNKICTAENEQDRKEGFISWRQQPGATEAHPVRAAEHFMPLIVIAGAGGTMP 520
           VNK F D L +I T     D      S R+     E  P     + + LI + G G +  
Sbjct: 308 VNKAFRDRLTQILTPSTSLDLLHSIRSVRKN----ENRP-----YTISLIGVNGVGKSTT 358

Query: 521 GERIFNWDLSDTFRL 565
             +I  W LS+ FR+
Sbjct: 359 LAKIAYWLLSNNFRI 373


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 87   ALFNDSCIRSANSGSPGALYSYVYDSG 7
            A + D C  ++ SG+P  +YS++  +G
Sbjct: 963  ATYKDICSLASESGNPDLIYSFLSIAG 989


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 351 SLFTTSPWCLLYINSLILWYDIPDPNTAIPSFLNSRNT 238
           S F  + W  L    ++LW D P+ +T + S +  RN+
Sbjct: 340 SFFFPTEWDKLKPTIILLWKDFPNYSTLL-SIMQERNS 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,644,540
Number of Sequences: 5004
Number of extensions: 56171
Number of successful extensions: 153
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)