Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_G07
(623 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1543 - 38138253-38138855,38139000-38139239 106 1e-23
01_06_1542 - 38132731-38133297,38134962-38135168,38135451-38135684 105 3e-23
06_03_0566 - 22315070-22315093,22315160-22315377,22316801-223169... 28 5.2
04_04_1444 + 33656994-33657209,33657397-33657561 28 5.2
04_04_0154 - 23146445-23146535,23146689-23146795,23146933-231469... 28 5.2
05_06_0219 + 26479708-26479710,26481045-26481173,26481675-264818... 28 6.9
03_05_0802 - 27823213-27823701,27823911-27823959,27824053-278241... 28 6.9
11_06_0289 - 21969248-21973516 27 9.2
>01_06_1543 - 38138253-38138855,38139000-38139239
Length = 280
Score = 106 bits (255), Expect = 1e-23
Identities = 63/173 (36%), Positives = 96/173 (55%), Gaps = 5/173 (2%)
Frame = +2
Query: 8 PES-YTYEYKAPGDPELAERIHESLKSAGIKS-KLDPKRGWDHGVFVPMMLINPSADIPI 181
P+S + EY APG P++A++ E L+ AG K D RG DHG +VP+M + P A++P+
Sbjct: 75 PKSMFQLEYPAPGAPDVAKKAKELLEQAGFGPVKEDHGRGLDHGAWVPLMFMYPEANVPV 134
Query: 182 VQVSVLSNQDAEQHYKLGQVLREFRKEGIAVLGSGMSYHNMREFMYSRHQGEVVNK---E 352
Q+S+ + +D HY LG+ L R +G+ +LGSG + HN+ M +G V + E
Sbjct: 135 CQLSLQTGRDGAYHYDLGRALAPLRDDGVLILGSGNATHNL-SCMAPVAEGTPVPQWAAE 193
Query: 353 FDDYLNKICTAENEQDRKEGFISWRQQPGATEAHPVRAAEHFMPLIVIAGAGG 511
FD +L + A D + + + P AHP + +HF+PL V GA G
Sbjct: 194 FDGWLQEALLAGGRHDDVKQY--EEKAPNGKMAHP--SPDHFLPLHVALGAAG 242
>01_06_1542 - 38132731-38133297,38134962-38135168,38135451-38135684
Length = 335
Score = 105 bits (252), Expect = 3e-23
Identities = 60/163 (36%), Positives = 86/163 (52%), Gaps = 1/163 (0%)
Frame = +2
Query: 26 EYKAPGDPELAERIHESLKSAGIKS-KLDPKRGWDHGVFVPMMLINPSADIPIVQVSVLS 202
+Y APG P+LA + E L+ AG K + RG DHG +VP+M + P A++P+ Q+S+ S
Sbjct: 149 KYPAPGAPDLAMKTKELLEQAGFGPVKENHSRGLDHGAWVPLMFMYPEANVPVCQLSLQS 208
Query: 203 NQDAEQHYKLGQVLREFRKEGIAVLGSGMSYHNMREFMYSRHQGEVVNKEFDDYLNKICT 382
+D HY+LG+ L R +G+ VLGSG + HN+R EFD +L +
Sbjct: 209 GRDGAYHYELGRALAPLRDDGVLVLGSGSATHNLRRMGPEGTPVPQWAAEFDGWLQEALL 268
Query: 383 AENEQDRKEGFISWRQQPGATEAHPVRAAEHFMPLIVIAGAGG 511
D K + P AHP + +HF+PL V GA G
Sbjct: 269 GGRHDDVKR---YEEKAPHGRVAHP--SPDHFLPLHVALGAAG 306
>06_03_0566 -
22315070-22315093,22315160-22315377,22316801-22316915,
22317029-22317031
Length = 119
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +2
Query: 383 AENEQDRKEGFISWRQQPGATEAHPVRAAEHFMPLIVI 496
A E +R EG++ WR +P H A F+ ++ +
Sbjct: 6 AAREAERWEGYVDWRNRPAVRGRHGGMLAASFVLVVEV 43
>04_04_1444 + 33656994-33657209,33657397-33657561
Length = 126
Score = 28.3 bits (60), Expect = 5.2
Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 4/112 (3%)
Frame = +2
Query: 134 VFVPMMLINPS-ADIPIVQVSVLSNQDAEQHYKLGQVLREFRKEGIAVLGSGMSYHNMRE 310
VFV +L+ + AD+ S LS Q QV R + G ++G G+S H R
Sbjct: 11 VFVSGVLVLANLADVSSAAASSLSRQQ-------DQVARVLGRRGRELIGEGLSGHQYRH 63
Query: 311 FMYSRHQGEVVNKEF---DDYLNKICTAENEQDRKEGFISWRQQPGATEAHP 457
+ Q EVV E + K ++++ +EG I G P
Sbjct: 64 EGKHKEQHEVVAMEATTKETAETKAGWVDDDEGAREGLIDSADYSGVAMHSP 115
>04_04_0154 -
23146445-23146535,23146689-23146795,23146933-23146993,
23147070-23147221,23147306-23147383,23147696-23147809,
23147880-23147956,23148128-23148194,23148341-23148406,
23148528-23148651,23148733-23148825,23149446-23149594,
23149681-23149761,23150502-23150644,23150758-23150872
Length = 505
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -3
Query: 156 ISIIGTKTPWSQPLFGSSFDLIPAL 82
I ++G TPW+ PL +++ + PAL
Sbjct: 154 IGVVGLITPWNYPLLMATWKVAPAL 178
>05_06_0219 +
26479708-26479710,26481045-26481173,26481675-26481818,
26481936-26482081,26482185-26482341,26482489-26482547,
26482787-26482946,26483020-26483169,26483279-26483415,
26483518-26483664,26483733-26483834,26483917-26483974,
26484084-26484185,26484322-26484379,26484717-26484775,
26486488-26486525,26486688-26486814,26486900-26487067,
26487879-26488010,26488089-26488198,26488273-26488333,
26488761-26488938,26489041-26489246,26489431-26489550,
26489631-26489729,26489968-26490156,26490291-26490430,
26491149-26491316,26491438-26491605,26491764-26491931,
26492250-26492417,26492533-26492700,26492853-26493020,
26493118-26493285,26493471-26493638,26493756-26493920,
26494679-26494850,26495012-26495175,26495296-26495405,
26495481-26495596,26495686-26495766,26495849-26496034,
26496203-26496547,26496637-26496777,26496869-26496916,
26497162-26497242,26497350-26497406,26497495-26497575,
26497675-26497757,26497842-26497968
Length = 2159
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -2
Query: 382 STNFIEIIIKLFIYNLTL-VSAIHKLPHIMV*HTRS*YSDTFFSELSQHL 236
S + + II + N+ + ++ +LPH+ HT Y F EL H+
Sbjct: 83 SVRYAKNIIYTYTGNILIAINPFQRLPHLAEPHTMEKYKGANFGELDPHV 132
>03_05_0802 -
27823213-27823701,27823911-27823959,27824053-27824120,
27824208-27824276,27824391-27824460,27824556-27824635,
27824706-27824784,27824949-27825025,27825110-27825176,
27825285-27825381,27825478-27825574,27825701-27825739,
27825843-27825907,27826034-27826142,27826275-27826487
Length = 555
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3
Query: 279 PNTAIPSFLNSRNTCPSL*CCSASWLLRTDT*TIGISA 166
PNT+ P+ + R T P+ SAS L T + +G++A
Sbjct: 405 PNTSSPTVIRKRITAPNTGSRSASHELATTSRDVGVAA 442
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 27.5 bits (58), Expect = 9.2
Identities = 23/116 (19%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Frame = +2
Query: 161 PSADIPIVQVSVLSNQDAEQHYKLGQV--LREFRKEGIAVLGSGMSYHNMREFMYSRHQG 334
PS ++ + VLSN A+QH L + L + RK G+ + G ++ + + H
Sbjct: 1061 PSRIDKMINIEVLSNVKAQQHDNLEDIGKLCQLRKLGVVIDGKKSHLGSLLKAISDLH-A 1119
Query: 335 EVVNKEFDDYLNKICTAENEQDRKEGFISWRQQPGATEAHPVRAAEHFMPLIVIAG 502
+ + + + + ++ + P E+ + A+H PL+ G
Sbjct: 1120 SLRSLSITIPTTTLEVTPSSPELQDIASRLKDHPEFLESLSISGAKHLFPLLTKGG 1175
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,966,074
Number of Sequences: 37544
Number of extensions: 360007
Number of successful extensions: 928
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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