Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_G06
         (498 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    25   0.29 
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        24   0.87 
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   6.2  

>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 25.4 bits (53), Expect = 0.29
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 311 VSASIK*VTDIIKSPLSFFSSWG 243
           + AS K    +I S LSFFS WG
Sbjct: 115 IVASSKLRASLISSCLSFFSQWG 137


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 23.8 bits (49), Expect = 0.87
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
 Frame = +1

Query: 337 SDIIEIVDTRTIAH--TLVNGKQGGTIE---VTKGPQPAIQRA 450
           SD+IE+++T    H  T+ NG  GG I    + + PQ A +RA
Sbjct: 23  SDVIEVIETDPDFHESTMFNG--GGEIPQNIIQQQPQQARRRA 63


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 395 SREVPSK*PRARSLPYSAPRAATSCRGVTLN 487
           S+  P+  PR+ + P   P  +TS    T+N
Sbjct: 207 SKASPAAAPRSVATPTGIPTPSTSASPPTVN 237


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,364
Number of Sequences: 336
Number of extensions: 2221
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)