Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_G06
(498 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0538 + 4646772-4647059,4647462-4647542,4647819-4647890,464... 31 0.51
01_06_0948 - 33242219-33242530,33242632-33242782,33242874-332431... 30 0.90
06_03_0743 + 24069752-24070483,24071890-24072345 30 1.2
03_05_0099 - 20764949-20765233 27 6.3
01_05_0712 - 24531654-24531874,24532438-24532538,24532621-245327... 27 6.3
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 27 8.4
08_02_1556 - 27852247-27852738,27853005-27853197,27854006-278540... 27 8.4
03_05_0814 + 27907158-27907368,27907981-27908270,27910250-279104... 27 8.4
03_05_0812 + 27890030-27890219,27890618-27890916,27891603-278918... 27 8.4
>05_01_0538 +
4646772-4647059,4647462-4647542,4647819-4647890,
4648458-4649321
Length = 434
Score = 31.1 bits (67), Expect = 0.51
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +3
Query: 276 DNVSDSFDRGTDHRHRLHQEIGYHR---DSRHQDYRA-HSGER*AGRYHRSDQG 425
D S +DR + R YHR DSR +DYR+ HS ER R R +G
Sbjct: 291 DRSSRDYDRSSRDRDHDRDIRDYHRRDRDSRDRDYRSRHSSERQDDRRDRDREG 344
>01_06_0948 -
33242219-33242530,33242632-33242782,33242874-33243111,
33243196-33243298,33243323-33243406,33243640-33243815,
33243943-33244074,33248406-33248967,33249084-33249842
Length = 838
Score = 30.3 bits (65), Expect = 0.90
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = -3
Query: 448 RAVW-QAAGPWSLRWYLPAYRSPE---CAR*SWCRLSR*YPISWCSL*RWSVPRSNESLT 281
R+ W +AAG W+L WY P + E C C + P+ CS R P+S E+
Sbjct: 276 RSTWVEAAGTWNLYWYAPKDQCDEVSPCGANGVCDTNN-LPV--CSCLRGFTPKSPEAWA 332
Query: 280 L 278
L
Sbjct: 333 L 333
>06_03_0743 + 24069752-24070483,24071890-24072345
Length = 395
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +3
Query: 279 NVSDSFDRGTDHRHRLHQEIGYHRDSRHQDYRAHSGER*AGRYHRSD--QGPAACHTARQ 452
+++ S DH HR H + +H + Q+ +H G A + D + P+A A
Sbjct: 66 SLTPSTTHDDDHHHRRHDQDHHHHHKQGQEKNSHGGGGAASCSNNDDKRESPSAAAAADD 125
Query: 453 ERQLLVVA 476
+ + VA
Sbjct: 126 QAAEVTVA 133
>03_05_0099 - 20764949-20765233
Length = 94
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -3
Query: 448 RAVWQAAGPWSLRWYLPAYRSPECAR*SWCRLS 350
R W AA P RW+ E R W LS
Sbjct: 27 RISWAAAAPMVARWWRRPLEEEEAVRPGWAALS 59
>01_05_0712 -
24531654-24531874,24532438-24532538,24532621-24532716,
24532951-24533048,24533827-24533883,24534764-24534895,
24535042-24535155,24535227-24535359,24535448-24535678,
24535761-24535843,24536009-24536137,24536504-24536599,
24536719-24536773,24537316-24537386,24537472-24537525,
24537691-24537768,24537985-24538117,24539381-24539496,
24539580-24539651,24540113-24540218,24540657-24540772,
24541170-24541319,24541410-24541492,24541591-24541669,
24542645-24542695
Length = 884
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -2
Query: 278 IKSPLSFFSSWGILTSSNESDSLVTTTLSFSSGSR 174
I++PL+ + + L +N SDSL T TLSF R
Sbjct: 651 IENPLAEGTKYLKLLQNNSSDSLETHTLSFELNMR 685
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 27.1 bits (57), Expect = 8.4
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = +1
Query: 34 GEELIYSCEAVKYDRRGYKPRDRSLLASDKALYVLDASGRKTFKLKHRLPLEKLRVVVTN 213
G E+ +S + + P DR++ S +++VLDAS F H E+ V ++
Sbjct: 2669 GNEIHFSVDELTDSSVLQAPADRTIQTSPSSIHVLDASESVDF---HGSMTEQRTVSISA 2725
Query: 214 ES---DSLLLVKIPQEL 255
+SLLL ++ +EL
Sbjct: 2726 SKRAINSLLLSRLIEEL 2742
>08_02_1556 -
27852247-27852738,27853005-27853197,27854006-27854070,
27854161-27854199,27854572-27854592,27854819-27855052,
27855420-27855504,27855953-27856026,27856516-27856647,
27856735-27856834,27857296-27857361,27857472-27857509,
27858013-27858219,27858378-27858427,27858871-27858940,
27859065-27859133,27859456-27859530,27860456-27860530,
27860887-27860934
Length = 710
Score = 27.1 bits (57), Expect = 8.4
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 295 LIEAL-TIVTDYTKKSDIIEIVDTRTIAHTLVNGKQGGTIE 414
L+ AL T + D T + IVD R A+ L NG +GG E
Sbjct: 217 LVSALCTQIIDATGSLRKLYIVDARPRANALANGAKGGGSE 257
>03_05_0814 +
27907158-27907368,27907981-27908270,27910250-27910493,
27910589-27910927,27911036-27911121,27911218-27911325,
27911471-27911778,27911864-27912127,27912227-27913010
Length = 877
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +1
Query: 163 KLKHRLPLEKLRVVVTNESDSLLLVKIPQELKKDK 267
++K R+P E ++ ++ D +L + +P +K+DK
Sbjct: 330 EIKKRVPFELIKSLLPVAGDQVLKLPLPHVIKEDK 364
>03_05_0812 +
27890030-27890219,27890618-27890916,27891603-27891840,
27892098-27892433,27892522-27892607,27892703-27892810,
27892918-27893225,27893304-27893567,27893660-27894431
Length = 866
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +1
Query: 163 KLKHRLPLEKLRVVVTNESDSLLLVKIPQELKKDK 267
+L+ R PL+ ++ ++ D +L + +PQ +K+DK
Sbjct: 323 ELRKRFPLQLVKDLLPAAGDYILKLPMPQIIKQDK 357
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,860,858
Number of Sequences: 37544
Number of extensions: 275333
Number of successful extensions: 796
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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