Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_G06
(498 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006714-6|AAN84810.2| 339|Caenorhabditis elegans Hypothetical ... 38 0.003
U97011-2|AAB52325.2| 689|Caenorhabditis elegans Hypothetical pr... 33 0.15
AF022983-3|AAB69942.2| 399|Caenorhabditis elegans Nuclear hormo... 31 0.61
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 29 1.4
U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as... 29 1.4
AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical ... 29 1.4
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 29 1.4
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 29 1.4
AC024817-40|AAF59577.4| 967|Caenorhabditis elegans Hypothetical... 29 1.4
U41748-2|AAM51524.1| 639|Caenorhabditis elegans Hypothetical pr... 29 1.9
U41748-1|AAA83335.3| 696|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z81549-1|CAB04466.1| 343|Caenorhabditis elegans Hypothetical pr... 27 7.6
U40954-4|AAB52655.3| 157|Caenorhabditis elegans Hypothetical pr... 27 7.6
>AC006714-6|AAN84810.2| 339|Caenorhabditis elegans Hypothetical
protein Y119D3B.12a protein.
Length = 339
Score = 38.3 bits (85), Expect = 0.003
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +3
Query: 300 RGTDHRHRLHQEIGYHRDSRHQDYRAHSGER*AGRYHRSDQGPAACHTARQER 458
R T+ H H+ HRD RH+D+R E + HR D + + R ER
Sbjct: 276 RSTEQHHHSHRSSRDHRDHRHRDHRGEHREHREHKEHRRDDRHRSERSERSER 328
>U97011-2|AAB52325.2| 689|Caenorhabditis elegans Hypothetical
protein F31F7.2 protein.
Length = 689
Score = 32.7 bits (71), Expect = 0.15
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Frame = +3
Query: 252 AKERQG*LDNVSDSFDRGTDHRHRLHQEIG----YHRDSRHQDYRAHSG-ER*AGRYHRS 416
A+E + D + FDR D ++ +I ++++ D+ H+G ER G+ HR
Sbjct: 345 AEEMKKQQDMMQAQFDRQLDMAYQQGSKIQILPPFNQNPHFHDHSEHTGKERGRGKEHRR 404
Query: 417 DQGPAACHTARQ-ERQLLVVASP 482
D G A+ T R E Q+ + SP
Sbjct: 405 DSGIASPRTPRDVEIQVTPIPSP 427
>AF022983-3|AAB69942.2| 399|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 270 protein.
Length = 399
Score = 30.7 bits (66), Expect = 0.61
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Frame = +1
Query: 37 EELIYSCEAVKYDRRGYKPR------DRSLLASDKALYVLDASGRKT-FKLKHRLPLEKL 195
E+ + CE V+Y K + D LA+ K L +L S K + + ++KL
Sbjct: 274 EKTKHHCEFVQYLEVTIKQQFQLLQIDEFELAAIKTLLLLSCSYPKPEIFAEFKGTMQKL 333
Query: 196 RVVVTNESDSLLLVKIPQELKKDKGDLIMSVTHLIEALTIVTDYTKKSDIIE 351
+ E S L VK+P + G LI+ + + A+ ++ ++TK SD+ +
Sbjct: 334 KNKCFAELMSYLTVKLPATHAERFGKLILVMGEIRAAVKVLYNHTKVSDLFD 385
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 29.5 bits (63), Expect = 1.4
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 175 RLPLEKLRVVVT-NESDSLLLVKIPQELKKDKGDLIMSVTHLIEALTIV 318
R LEKL+ + + D+ VKI +ELKK+K DL + HL E T +
Sbjct: 2083 RSQLEKLKNESSLSNVDNSNAVKIVEELKKEKKDLTDRLGHLNELKTSI 2131
>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
assigned gene nameprotein 77 protein.
Length = 1004
Score = 29.5 bits (63), Expect = 1.4
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = +1
Query: 34 GEELIYSCEAVKYDRRGYKPRDRSLLASDKALYVLDASGRKTFKLKHRLPLEKLRVVVTN 213
G LI E +K R+ +PR L + + +SG+ +R+PLE ++
Sbjct: 575 GRVLIRQSEVMKQTRKELQPRYLVLFTDYLWICRVSSSGQFDINRSYRIPLEYMKFERME 634
Query: 214 ESDSLLLVKIPQELK 258
E + + ++I +K
Sbjct: 635 EDERIRCLQIRSRVK 649
>AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical
protein Y53C10A.4 protein.
Length = 908
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 121 KALYVLDASGRKTFKLKHRLPLEKLRVVVTNESDSLLL 234
+ L + G ++KLK +L LEK+ + +N +DS L+
Sbjct: 50 ETLIISKQKGACSYKLKEKLRLEKVWIASSNTADSFLI 87
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 29.5 bits (63), Expect = 1.4
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 175 RLPLEKLRVVVT-NESDSLLLVKIPQELKKDKGDLIMSVTHLIEALTIV 318
R LEKL+ + + D+ VKI +ELKK+K DL + HL E T +
Sbjct: 2083 RSQLEKLKNESSLSNVDNSNAVKIVEELKKEKKDLTDRLGHLNELKTSI 2131
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 29.5 bits (63), Expect = 1.4
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 175 RLPLEKLRVVVT-NESDSLLLVKIPQELKKDKGDLIMSVTHLIEALTIV 318
R LEKL+ + + D+ VKI +ELKK+K DL + HL E T +
Sbjct: 2083 RSQLEKLKNESSLSNVDNSNAVKIVEELKKEKKDLTDRLGHLNELKTSI 2131
>AC024817-40|AAF59577.4| 967|Caenorhabditis elegans Hypothetical
protein Y54G2A.21 protein.
Length = 967
Score = 29.5 bits (63), Expect = 1.4
Identities = 20/78 (25%), Positives = 36/78 (46%)
Frame = +1
Query: 181 PLEKLRVVVTNESDSLLLVKIPQELKKDKGDLIMSVTHLIEALTIVTDYTKKSDIIEIVD 360
PL K V + N + ++K + K+ +LI S +A T +++ +
Sbjct: 590 PLWKYSVTLDNTT-CFPILKTRKATLKNAVNLIKSAEEKYQAATGKMKLESHAELKALQS 648
Query: 361 TRTIAHTLVNGKQGGTIE 414
+ + T+VNG GGT+E
Sbjct: 649 EKLLLDTIVNGTPGGTLE 666
>U41748-2|AAM51524.1| 639|Caenorhabditis elegans Hypothetical
protein C31H2.1b protein.
Length = 639
Score = 29.1 bits (62), Expect = 1.9
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Frame = +1
Query: 31 NGEELIYSCEAVKYDR--RGYKPRDRSLLASDKALYVLDASGRKTFKL-KHRLPLEKLRV 201
+G + +YS EA++YDR +G K + L L D + KL + L +E+LR
Sbjct: 179 SGSKRLYSDEAIEYDRINQGKKQSPQILADEGGVLSNFDLKEVGSVKLIRLLLIIERLRP 238
Query: 202 VVTNESDSLLLVKIPQELKKDKGDLIMSVTHLI 300
+ L + D GD + +L+
Sbjct: 239 EIVYAPSIYPLCSLLLHFNDDDGDCFACINYLL 271
>U41748-1|AAA83335.3| 696|Caenorhabditis elegans Hypothetical
protein C31H2.1a protein.
Length = 696
Score = 29.1 bits (62), Expect = 1.9
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Frame = +1
Query: 31 NGEELIYSCEAVKYDR--RGYKPRDRSLLASDKALYVLDASGRKTFKL-KHRLPLEKLRV 201
+G + +YS EA++YDR +G K + L L D + KL + L +E+LR
Sbjct: 236 SGSKRLYSDEAIEYDRINQGKKQSPQILADEGGVLSNFDLKEVGSVKLIRLLLIIERLRP 295
Query: 202 VVTNESDSLLLVKIPQELKKDKGDLIMSVTHLI 300
+ L + D GD + +L+
Sbjct: 296 EIVYAPSIYPLCSLLLHFNDDDGDCFACINYLL 328
>Z81549-1|CAB04466.1| 343|Caenorhabditis elegans Hypothetical
protein F55C9.1 protein.
Length = 343
Score = 27.1 bits (57), Expect = 7.6
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 2/111 (1%)
Frame = +1
Query: 4 RGMASPAWPNGEEL-IYSCEAVKYDRR-GYKPRDRSLLASDKALYVLDASGRKTFKLKHR 177
RG + N E + EA Y+R K ++ D L+VLD + T +KH
Sbjct: 91 RGFQIEIFINNESFEVVLTEARFYNRSIKIKLKNEKFPVRDYLLHVLDVTSGSTINIKHY 150
Query: 178 LPLEKLRVVVTNESDSLLLVKIPQELKKDKGDLIMSVTHLIEALTIVTDYT 330
E ++ +L+ L +++ + E LTI T++T
Sbjct: 151 DTSELFQLEEARRCFKNILINRVYCLSNSTSNVLQYCSISTELLTIDTNHT 201
>U40954-4|AAB52655.3| 157|Caenorhabditis elegans Hypothetical
protein ZK813.3 protein.
Length = 157
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 276 DNVSDSFDRGTDHRHRLHQEIGYHRDSR 359
+ V D FD HR R H+ +HR+SR
Sbjct: 55 NRVYDEFDVPRKHRRRRHRGRRHHRNSR 82
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,216,070
Number of Sequences: 27780
Number of extensions: 220268
Number of successful extensions: 622
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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