Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_G05
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc...   192   3e-50
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom...   192   3e-50
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   2.0  
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    25   6.2  
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    25   6.2  
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    25   8.2  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    25   8.2  

>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
           L20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score =  192 bits (468), Expect = 3e-50
 Identities = 96/174 (55%), Positives = 120/174 (68%), Gaps = 4/174 (2%)
 Frame = +2

Query: 32  LKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKE 211
           LKEY+V+GRK+P+E EP P L++MR+F+P+  VAKSR+WYFL+ + K KK TGEIV+I E
Sbjct: 3   LKEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINE 62

Query: 212 IPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQI 391
           I E  P+K K FGIW+RY+SRSG HNMY+E+RD +  GAV   Y DM ARHRAR  SI+I
Sbjct: 63  ISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRI 122

Query: 392 IK-VEVIKAAACRRPQVKQFHTSKIGFPLPKR---VHQYKRLNTFAYKRPSTYF 541
           +K VEV K    RR  VKQ     + FPLP R   V        FA  RPST++
Sbjct: 123 LKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFAPHRPSTFY 176


>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
           protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score =  192 bits (468), Expect = 3e-50
 Identities = 96/174 (55%), Positives = 120/174 (68%), Gaps = 4/174 (2%)
 Frame = +2

Query: 32  LKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKE 211
           LKEY+V+GRK+P+E EP P L++MR+F+P+  VAKSR+WYFL+ + K KK TGEIV+I E
Sbjct: 3   LKEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINE 62

Query: 212 IPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQI 391
           I E  P+K K FGIW+RY+SRSG HNMY+E+RD +  GAV   Y DM ARHRAR  SI+I
Sbjct: 63  ISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRI 122

Query: 392 IK-VEVIKAAACRRPQVKQFHTSKIGFPLPKR---VHQYKRLNTFAYKRPSTYF 541
           +K VEV K    RR  VKQ     + FPLP R   V        FA  RPST++
Sbjct: 123 LKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFAPHRPSTFY 176


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +2

Query: 2   HEAKMKAKGELKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWY 151
           HE +M A    +E  V+   +  E     P   +R +SP+ ++  S FWY
Sbjct: 460 HERQM-ADTCYQEILVLKSSIEKEKVEIVPFLDIRKYSPNEVLCMSPFWY 508


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 119 DPIVAKSRFWYFLRQLKKFK 178
           D ++   RFWY+L + K F+
Sbjct: 476 DRLIVTFRFWYYLMKAKSFQ 495


>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 292 HIVDTRARLVTQPDTKVLNLNRTLFWNFLDGYNFTSSLF 176
           H+V+  +          LNL    F NF+DG   TS+ F
Sbjct: 282 HVVEEVSEEYNDKTVVYLNLLCDSFHNFMDGLAITSAFF 320


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +2

Query: 86  PPLYKMRIFSPDPIVAKSRFWYFL 157
           PP     +  P  +  K +FWY++
Sbjct: 534 PPKSNAELVDPSTLSGKDKFWYYI 557


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 444 NSTPARSVSRYQNAFTNTSVSIPLHTRGRAR 536
           NS+P +S+S+Y NA  N   SI   T    +
Sbjct: 148 NSSPFKSLSQYWNAAYNKKESISSSTNSNIK 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,432,893
Number of Sequences: 5004
Number of extensions: 49719
Number of successful extensions: 157
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)