Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_G04
(494 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0243 - 1783903-1784658 29 1.6
05_07_0226 - 28515052-28515064,28515426-28515502,28515610-285157... 29 2.7
12_02_0954 - 24757417-24758214 28 4.7
10_08_0850 + 21050164-21050189,21050874-21050979,21051186-210512... 28 4.7
03_02_1034 + 13555569-13556084,13556096-13556527 27 6.3
11_06_0599 + 25395606-25395705,25396465-25396544,25396901-253969... 27 8.3
08_02_1458 - 27270834-27271320,27271752-27271961,27272627-272736... 27 8.3
07_01_0890 - 7437901-7439339,7439452-7439657,7439841-7440171,744... 27 8.3
03_02_0268 - 6994095-6994555,6996873-6996982,6997237-6998612 27 8.3
>07_01_0243 - 1783903-1784658
Length = 251
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 276 LIPCRSCGTSACPSAYPADRMCCLTLDIHLS 184
L+PC CG +CPS P R+ L + +H S
Sbjct: 49 LVPCVGCGGFSCPSLVPPPRLLPL-VPLHQS 78
>05_07_0226 -
28515052-28515064,28515426-28515502,28515610-28515767,
28515852-28515937,28516048-28516351,28516410-28517490
Length = 572
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -2
Query: 46 ELHAELVPDGRLRLV 2
E HAE+ PDGRLR+V
Sbjct: 196 EAHAEVAPDGRLRMV 210
>12_02_0954 - 24757417-24758214
Length = 265
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 7 GGDARRVPVQREARPRPRRGQPADVPAGSA 96
GG R VP+ R RPR +PA +A
Sbjct: 88 GGSLRNVPIGGSTRKRPRPSRPARAAVAAA 117
>10_08_0850 + 21050164-21050189,21050874-21050979,21051186-21051257,
21051775-21051828,21052077-21052184,21052653-21052802,
21052914-21053258,21053361-21054801,21054844-21055675,
21057060-21057325,21057530-21059603,21060172-21060442,
21060556-21060990
Length = 2059
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -3
Query: 75 CRLSASRSGTSFTLNWYPTGVSASC 1
C SA+ F LNW PT +S C
Sbjct: 1963 CSTSAAGPHQQFPLNWIPTNLSRRC 1987
>03_02_1034 + 13555569-13556084,13556096-13556527
Length = 315
Score = 27.5 bits (58), Expect = 6.3
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Frame = +2
Query: 50 PDLDADNLQTFLQEVRRVA--------VEEPARDELAVDMANDICPEARITYLDKCISSV 205
P+LD D L+ +++RR+ VE + A+D + PE+ LD+ + SV
Sbjct: 229 PELD-DQLELTPRDIRRLVRMALKGKNVERDEAYQRALDGGTPVSPESLAAMLDQALQSV 287
Query: 206 RQ 211
RQ
Sbjct: 288 RQ 289
>11_06_0599 +
25395606-25395705,25396465-25396544,25396901-25396966,
25397076-25397123,25397226-25397293,25397404-25397476,
25397573-25397734,25398042-25398236,25398325-25398413,
25398487-25398676
Length = 356
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -2
Query: 304 FEETLSENVSDTLQELRYECVPVGVPGRPHVLPH 203
F T +VS+ +++L ++ + VG PG P + H
Sbjct: 114 FRGTQEHSVSNWIEDLFWKQLDVGYPGMPDAMVH 147
>08_02_1458 -
27270834-27271320,27271752-27271961,27272627-27273624,
27274099-27274195,27274278-27274393,27274465-27274590,
27275123-27275233,27275347-27275428,27275844-27275989,
27276457-27276650,27277277-27277388,27277869-27278001,
27278295-27278437,27278488-27278562,27278830-27278937,
27279072-27279197,27279752-27279836,27280358-27280440,
27280545-27280625,27280709-27280789,27281960-27282034,
27282112-27282498,27282902-27283036
Length = 1396
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -1
Query: 416 IRLKHKLNISTYTYTIVLKYLI*LDELFRVQ*VSVWLV 303
+R + N+++Y ++L YL+ DEL RV + V +V
Sbjct: 351 MRAQDLANVTSYREWVLLGYLVCPDELLRVTSIDVAMV 388
>07_01_0890 -
7437901-7439339,7439452-7439657,7439841-7440171,
7440268-7440405,7440619-7440874,7440963-7441318,
7441421-7441709
Length = 1004
Score = 27.1 bits (57), Expect = 8.3
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = -2
Query: 190 LIQISDPCFR--ADVVSHVDGELVPGRLLDGDSAHFLQERLQVVRVEVGDELHAELVPDG 17
+ +SD C A+ + + + +L GDS+ Q V +ELH+EL+P+
Sbjct: 550 VFSLSDDCRTGAAEAIRELGSLGIKSVMLTGDSSA-AATHAQGQLGGVMEELHSELLPED 608
Query: 16 RLRLV 2
++RLV
Sbjct: 609 KVRLV 613
>03_02_0268 - 6994095-6994555,6996873-6996982,6997237-6998612
Length = 648
Score = 27.1 bits (57), Expect = 8.3
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +2
Query: 98 RVAVEEPARDELAVDMANDICPEARITYLDKCISSVRQHMRSAGYADGHALVPQLLQGIR 277
+ A+ +PA+ L VDM N+ + +I C+ +R M G+ LL G+
Sbjct: 234 KAALMQPAKVSLLVDMLNEGAVDTKI----NCVRLIRILMEEKGFRPDTVASLSLLVGVM 289
Query: 278 DVFR 289
+ R
Sbjct: 290 RLVR 293
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,996,525
Number of Sequences: 37544
Number of extensions: 207403
Number of successful extensions: 732
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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