Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_G04
         (494 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   1.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.8  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   5.4  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   5.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   5.4  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 205 HTRYTLIQISDPCFRADVVSHV 140
           HT Y LIQ+  PC    V+S V
Sbjct: 243 HTGYFLIQVYVPCVLIVVLSWV 264


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -2

Query: 160 ADVVSHVDGELVPGRLLDGDSAH 92
           +D V H   ELVP   L GD  H
Sbjct: 188 SDFVIHRSPELVPMPTLKGDGRH 210


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 364 KTMVYVYVDIFNLCFNRICFIISCKHDFSRRHIYIFF 474
           KT++ +  ++  L  NR C +I    D    HI   F
Sbjct: 27  KTIMRILKEVCVLQANRACILIKDLFDNVHNHIQNIF 63


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 364 KTMVYVYVDIFNLCFNRICFIISCKHDFSRRHIYIFF 474
           KT++ +  ++  L  NR C +I    D    HI   F
Sbjct: 10  KTIMRILKEVCVLQANRACILIKDLFDNVHNHIQNIF 46


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 34  QREARPRPRRGQPADVPAGSAQS 102
           QR + P P +G P   P G+  S
Sbjct: 35  QRGSPPNPSQGPPPGGPPGAPPS 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,303
Number of Sequences: 438
Number of extensions: 2126
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)