Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_G03
         (471 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   0.94 
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   2.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   5.0  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   8.8  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   8.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.8  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.8 bits (49), Expect = 0.94
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 126 RSRYPRRVNRFQCSPEWKRTVSSSPSHRPCVV 31
           RS    RV    CSP ++  + S+P   P +V
Sbjct: 41  RSLKAHRVVLSACSPYFRELLKSTPCKHPVIV 72


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +3

Query: 240 HDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDE 347
           +D ++VGG      V   L +  N K L     PDE
Sbjct: 69  YDFIVVGGGAARAVVAGRLSEVSNWKVLLLEAGPDE 104


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 126 RSRYPRRVNRFQCSPEWKRTVSSSPSHRPCVVA*AP 19
           RSR  R   RF  S   +R+ SSS S  P ++   P
Sbjct: 18  RSRSRRYSKRFSSSIVDRRSPSSSRSPSPSLLTSQP 53


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +1

Query: 169 ICSDLQWSPSKSPSAMRRWTRPR 237
           I  D +W    +    R W+RPR
Sbjct: 29  ITGDEKWVVYNNIKRKRSWSRPR 51


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +1

Query: 169 ICSDLQWSPSKSPSAMRRWTRPR 237
           I  D +W    +    R W+RPR
Sbjct: 150 ITGDEKWVVYNNIKRKRSWSRPR 172


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 190 SPSKSPSAMRRWTRPRFTTSYSWAGPLAFLKCRSS 294
           SP+ SPS   +       T+ S  G    L+C +S
Sbjct: 740 SPNASPSPAEQCASTTTITARSPQGSQGLLQCATS 774


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,947
Number of Sequences: 438
Number of extensions: 2322
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)