Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_G02
         (553 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0098 - 700443-700660,701112-701268,701586-701678,701763-70...    29   3.3  
12_01_0038 - 312152-312748,312930-313362,313572-314440,314535-31...    28   4.3  
11_01_0039 - 290960-291086,291615-291714,291809-292013,292466-29...    28   4.3  
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129...    27   7.5  
08_01_0463 - 4075037-4075316,4075997-4076151,4076818-4078861,408...    27   7.5  
12_02_0362 + 17998110-17998345,17998877-17998958,18000309-180003...    27   10.0 

>08_01_0098 -
           700443-700660,701112-701268,701586-701678,701763-702149,
           702755-702829,703486-703609,703693-703832,703904-703993,
           704254-704298,704917-705042,705138-705272,705966-706451,
           706539-706596,706728-706855,707209-707463
          Length = 838

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 187 ESCHHIYQYERDLRLVTSFESTISKINPTLK 279
           E CH   ++ER+   +  ++  + K+NP LK
Sbjct: 530 EICHAWIRFERECGTLEDYDLAVKKVNPRLK 560


>12_01_0038 -
           312152-312748,312930-313362,313572-314440,314535-314584,
           314589-315192,315674-315718,316100-316317,317020-317332,
           318681-318716
          Length = 1054

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -2

Query: 543 MRTTAAKFHHRYWPFYLNL*CPLRTQPLRPVSRK--RTRYEFQATV 412
           ++  + KFH  Y  FY +    L  +PL P   K   TRY+ Q +V
Sbjct: 410 VKACSGKFHPLYQFFYFDSVESLPVEPLEPAELKPENTRYDAQISV 455


>11_01_0039 -
           290960-291086,291615-291714,291809-292013,292466-292513,
           295071-295646,295828-296260,296470-297338,297433-298227,
           298709-298753,299135-299352,300055-300364,302715-302984
          Length = 1331

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -2

Query: 543 MRTTAAKFHHRYWPFYLNL*CPLRTQPLRPVSRK--RTRYEFQATV 412
           ++  + KFH  Y  FY +    L  +PL P   K   TRY+ Q +V
Sbjct: 534 VKACSGKFHPLYQFFYFDSVESLPVEPLEPAELKPENTRYDAQISV 579


>10_08_0630 -
           19410852-19411235,19411370-19412257,19412440-19412941,
           19413662-19414135,19414982-19415040,19415468-19415629
          Length = 822

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 141 CPYHHQTDLFYKSYRGIMPSYLSVRERSPA 230
           CPY HQ D  Y++   +  S  S    +PA
Sbjct: 587 CPYFHQLDALYRNKAALNSSSSSAAAAAPA 616


>08_01_0463 - 4075037-4075316,4075997-4076151,4076818-4078861,
            4080757-4081589
          Length = 1103

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -3

Query: 446  VKERGTNFKRLLLLRSKFEFKFRIS 372
            +K++G N K   LLR+++  KFRIS
Sbjct: 1035 IKDKGRNIKFSWLLRNQYVEKFRIS 1059


>12_02_0362 +
           17998110-17998345,17998877-17998958,18000309-18000392,
           18000600-18000734,18001395-18001570,18001654-18001805,
           18003730-18004575,18004961-18005301
          Length = 683

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 534 TAAKFHHRYWPFYLNL*CPLRTQPLRPVSRKRTRYEF 424
           TA  F HR++    +     R Q LR ++RKR  Y+F
Sbjct: 86  TAIVFCHRFYLRQSHAKNDRRCQKLRAITRKRNEYKF 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,989,214
Number of Sequences: 37544
Number of extensions: 226377
Number of successful extensions: 559
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)