Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_G02
         (553 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20796| Best HMM Match : RVT_1 (HMM E-Value=0.047)                   31   0.83 
SB_3142| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.1  
SB_22455| Best HMM Match : Pept_tRNA_hydro (HMM E-Value=2.3)           30   1.1  
SB_12412| Best HMM Match : Kinesin (HMM E-Value=6.3e-15)               30   1.4  
SB_27891| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  

>SB_20796| Best HMM Match : RVT_1 (HMM E-Value=0.047)
          Length = 660

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
 Frame = -3

Query: 473 ARNLYVPFH-VKERGT----NFKRLLLLRSKFEFKFRISCSPVERILSRDANELRIECYR 309
           A N Y+P   +K R T    N   +  LR K   + ++  SP + +  R   ELR E  R
Sbjct: 244 AVNDYIPTKKIKGRNTPPWINGDIIHALRKKEAMRKKLRKSPTDALKDR-FKELRAEAKR 302

Query: 308 CSKSQRTDFYFSV 270
             +S RTDF+ S+
Sbjct: 303 MIRSSRTDFFNSM 315


>SB_3142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2209

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
 Frame = -3

Query: 473  ARNLYVPFH-VKERGT----NFKRLLLLRSKFEFKFRISCSPVERILSRDANELRIECYR 309
            A N Y+P   +KER T    N   +  L  K   + ++  SP + +  R   ELR E  R
Sbjct: 1346 AVNDYIPTKKIKERNTPPWINGGIIHALGKKEAMRKKLRKSPTDALKDR-FKELRAEAKR 1404

Query: 308  CSKSQRTDFYFSV 270
              +S RTDF+ S+
Sbjct: 1405 MIRSSRTDFFNSM 1417


>SB_22455| Best HMM Match : Pept_tRNA_hydro (HMM E-Value=2.3)
          Length = 420

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = +2

Query: 11  GFHVSP*QIHFFNQRSQTITFLTDYLFKSCVTNNLCWNILTVCVSLSSSNGLILQILSWN 190
           G   SP  I F N++S     +   + KS       W I  +CV L++ +G+IL  L W 
Sbjct: 124 GIFDSPGPIIFVNEKSPKNGAVFTAMTKS-------WQIPALCVLLAAISGVILWFLVWR 176

Query: 191 HA 196
           H+
Sbjct: 177 HS 178


>SB_12412| Best HMM Match : Kinesin (HMM E-Value=6.3e-15)
          Length = 1001

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -1

Query: 403 VRNSNLNSEFLVRPLKGSSLGMRTSSGSNAIDARSRNAL 287
           VRN+N++    V+P+K    G R SS S    +++R+AL
Sbjct: 149 VRNNNMSRVRCVKPIKSRGGGARDSSTSRGQRSQTRSAL 187


>SB_27891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 609

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
 Frame = -3

Query: 473 ARNLYVPFH-VKERGT----NFKRLLLLRSKFEFKFRISCSPVERILSRDANELRIECYR 309
           A N Y+P   +K R T    N   +  LR K   + ++  SP +    R   ELR E  R
Sbjct: 269 AVNDYIPTKKIKGRNTSPWINGDIIHALRKKKAVRKKLRKSPTDAFKDR-FKELRAEAKR 327

Query: 308 CSKSQRTDFYFSV 270
             +S RTDF+ S+
Sbjct: 328 MIRSSRTDFFNSL 340


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,518,553
Number of Sequences: 59808
Number of extensions: 293576
Number of successful extensions: 711
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)