Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_F24
(552 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 195 2e-50
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 48 5e-06
SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015) 39 0.002
SB_49646| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.47
SB_57396| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 29 1.9
SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_30566| Best HMM Match : zf-C4_Topoisom (HMM E-Value=0.38) 29 3.3
SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16) 29 3.3
SB_50181| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051) 28 4.4
SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25) 28 4.4
SB_51982| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_6095| Best HMM Match : 7tm_1 (HMM E-Value=0.013) 28 4.4
SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 28 5.8
SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11) 28 5.8
SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10) 28 5.8
SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05) 28 5.8
SB_23935| Best HMM Match : bZIP_Maf (HMM E-Value=0.76) 28 5.8
SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20) 28 5.8
SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29) 28 5.8
SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6) 28 5.8
SB_8103| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_47012| Best HMM Match : ScdA_N (HMM E-Value=5.3) 27 7.7
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 195 bits (476), Expect = 2e-50
Identities = 85/116 (73%), Positives = 102/116 (87%)
Frame = +2
Query: 8 GDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKS 187
GD KNNPP+ FTAQVIV+NHPG+I GY+PVLDCHTAHIACKF ++ EK+DRR+GK
Sbjct: 186 GDFKNNPPKPCKSFTAQVIVMNHPGEIHAGYSPVLDCHTAHIACKFDKLLEKIDRRSGKK 245
Query: 188 TEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 355
EDNPK IK+GDAA+V ++PSKP+CVE+F EFPPLGRFAVRDM+QTVAVGVIK+V+
Sbjct: 246 LEDNPKMIKTGDAAMVEMIPSKPMCVETFTEFPPLGRFAVRDMKQTVAVGVIKSVD 301
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 48.0 bits (109), Expect = 5e-06
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +2
Query: 164 VDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRD 313
+D++TGK + P+ IK AI L +C+E F +F +GRF +RD
Sbjct: 496 IDKKTGKKGQTRPRFIKQDQIAIARLETQGVICIEKFSDFQQMGRFTLRD 545
>SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)
Length = 80
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +2
Query: 227 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 343
A V L S+P+CVE ++++ LGRF +R T+A GVI
Sbjct: 40 AEVELQTSRPVCVELYKDYKDLGRFMLRYGGNTIAAGVI 78
>SB_49646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 624
Score = 31.5 bits (68), Expect = 0.47
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +2
Query: 101 TPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVE 268
TPVL TAH+ K ++ + D P ++KS ++VN V S L E
Sbjct: 223 TPVLRIKTAHVTDKDNRVRSVLIIDNISQAPDTPATLKSSSDSVVNSVGSVGLVAE 278
>SB_57396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 757
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/73 (24%), Positives = 36/73 (49%)
Frame = +1
Query: 271 LPGIPTPRSFRRA*HEADGRRRCNKGCELQGSRWWQSHQSCRKSHQGQEVASTVNSSVLY 450
L G+P+ F++ H++ RRR + E+ GSR + SH+ Q +V+ +
Sbjct: 166 LRGLPSDNVFKKGMHKSLRRRREDVPDEVDGSRGFDVDNEEMVSHENQVFNKSVDLNPGE 225
Query: 451 TTAILHSPKGVQK 489
+LH + +++
Sbjct: 226 FANLLHRNRNIKE 238
>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1887
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +3
Query: 129 T*PANLPKSKRKSTVVLVNQQRTTLNPLNLVMPP 230
T PA P + RK+T Q RTT P PP
Sbjct: 1459 TVPATKPPTTRKTTTATTTQGRTTRKPTTTAEPP 1492
>SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 903
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 233 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 322
+++VP++P CV SF EF + +RD+ Q
Sbjct: 380 MSVVPAQPQCVASFPEFCAVSVSYIRDLSQ 409
>SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 695
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = +2
Query: 128 HIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKP 256
HIA K E+K D ++ K+ + PK++ SGD ++VP++P
Sbjct: 74 HIAKKL-EVK---DSQSSKNNDLYPKTVPSGDIGTDSVVPNQP 112
>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 650
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +3
Query: 174 VLVNQQRTTLNPLNLVMPPLSTWFPPSPCVWSPSRNSHP 290
+ + +Q + P PP ++PP+P + P++ S+P
Sbjct: 163 LFILRQHPSYPPTQPFYPPTQPFYPPTPSSYPPTQPSYP 201
>SB_30566| Best HMM Match : zf-C4_Topoisom (HMM E-Value=0.38)
Length = 597
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -2
Query: 311 HARRNDRGVGIPGRTPHTGAWR--EPG*QWR 225
+A+ GV + GR P G WR PG +WR
Sbjct: 19 YAKAVPSGVKLVGRNPRYGEWRHKRPGYEWR 49
>SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16)
Length = 3999
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 238 VDNGGITRFNGFRVVLC*FTSTTVDFLFDFGKFAG 134
VDN G+ N F V++C T+D++FD + +G
Sbjct: 1700 VDNAGMYAENAFTVLVC--DRNTIDYIFDEVQLSG 1732
>SB_50181| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)
Length = 503
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 385 QSCRKSHQGQEVASTVNSSVLYTTAILHSPKGVQKERRATN 507
+S +KS + A T+NS+ +YT + P+ V + TN
Sbjct: 238 KSAKKSKKSDATAPTINSTGIYTQLVDLLPRNVVLDDEVTN 278
>SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)
Length = 1097
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 339 TPTATVCLMSRTAKRPRGGNSWKDSTHRGLEG 244
TP+ VCL+SR + PR W R + G
Sbjct: 282 TPSLYVCLLSRAHRDPRLSTGWSPYEKREVRG 313
>SB_51982| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 182 KSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPP--LGRFAVRDMRQ 322
KST+DN S S A V SK + V S +E PP + R V ++Q
Sbjct: 57 KSTKDNGNSKGSSSRASERGVGSKQVSVSSLKEAPPRVVKRHTVSSLQQ 105
>SB_6095| Best HMM Match : 7tm_1 (HMM E-Value=0.013)
Length = 872
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = +1
Query: 73 SPRSNIKRIHTCIGLPHSPHSLQICR 150
SP+ KR T GLP S HSL CR
Sbjct: 537 SPKMKKKRPKTGEGLPGSKHSLDSCR 562
>SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 904
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 233 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 322
++++P++P CV SF EF + +RD+ Q
Sbjct: 381 MSVMPAQPQCVASFPEFCAVSVSYIRDLLQ 410
>SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11)
Length = 1175
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 233 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 322
+++ P++P CV SF EF + +RD+ Q
Sbjct: 385 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 414
>SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10)
Length = 549
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 233 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 322
+++ P++P CV SF EF + +RD+ Q
Sbjct: 389 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 418
>SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
Length = 1131
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 233 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 322
+++ P++P CV SF EF + +RD+ Q
Sbjct: 1044 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 1073
>SB_23935| Best HMM Match : bZIP_Maf (HMM E-Value=0.76)
Length = 715
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 409 GQEVASTVNSSVLYTTAILHSPKGVQKERRATN 507
G+ V +T+N + L+++ I HSP Q RA+N
Sbjct: 97 GESVHTTLNDTPLHSSVIDHSPMYPQDTIRASN 129
>SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 887
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 233 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 322
+++ P++P CV SF EF + +RD+ Q
Sbjct: 532 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 561
>SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20)
Length = 1285
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 233 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 322
+++ P++P CV SF EF + +RD+ Q
Sbjct: 1111 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 1140
>SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29)
Length = 605
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 233 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 322
+++ P++P CV SF EF + +RD+ Q
Sbjct: 184 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 213
>SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 988
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 233 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 322
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 233 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 322
+++ P++P CV SF EF + +RD+ Q
Sbjct: 87 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 116
>SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 233 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 322
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 233 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 322
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
Length = 496
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/62 (29%), Positives = 26/62 (41%)
Frame = +3
Query: 225 PPLSTWFPPSPCVWSPSRNSHPSVVSPCVT*GRRSPSV**RL*TSRKQVVAKSPKLPKKP 404
PP +PPSP + PS + +P R P + R S + + P+ P P
Sbjct: 293 PPSPPRYPPSPPRYPPSLHRYPQSPLRYPPSPIRYPPLPSRYPPSPPRYPSSHPRYPPSP 352
Query: 405 PR 410
PR
Sbjct: 353 PR 354
>SB_8103| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1071
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -2
Query: 311 HARRNDRGVGIPGRTPHTGAWR--EPG*QWR 225
+A++ GV + R+P G WR +PG +WR
Sbjct: 657 YAKKVPSGVKLVERSPRYGEWRHKKPGYEWR 687
>SB_47012| Best HMM Match : ScdA_N (HMM E-Value=5.3)
Length = 840
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -2
Query: 311 HARRNDRGVGIPGRTPHTGAWR--EPG*QWR 225
+A++ GV + R+P G WR +PG +WR
Sbjct: 659 YAKKVPSGVKLVERSPRYGEWRHKKPGYEWR 689
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,462,955
Number of Sequences: 59808
Number of extensions: 438793
Number of successful extensions: 1481
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1476
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -