Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F23
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    30   0.25 
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    28   0.99 
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    28   0.99 
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac...    27   1.7  
SPBC2D10.07c |||mitochondrial inner membrane peptidase complex c...    26   3.0  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    25   5.3  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   5.3  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   5.3  
SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    25   5.3  
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    25   7.0  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    25   7.0  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    25   7.0  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.9 bits (64), Expect = 0.25
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +1

Query: 244 STTGAMARSYSMCLSPAVSCCPVGRCRWTGNPPRPILAFSPPTKTWTQCATLN 402
           ++T +   S S  LS + SC        TGN   P+    PPT + T   T N
Sbjct: 374 ASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTN 426



 Score = 24.6 bits (51), Expect = 9.2
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +1

Query: 244 STTGAMARSYSMCLSPAVSCCPVGRCRWTGNPPRPILAFSPPTKT 378
           ++T +   S S   S + SC        TGN   P+    PPT T
Sbjct: 320 ASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTST 364


>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 27.9 bits (59), Expect = 0.99
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 102 QRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKFLDSAGSKLD 248
           QR    K+D+KEK +    ++A V+ +E+A   L+ A K   +   K D
Sbjct: 208 QRPSVIKKDKKEKKEGKPSQEASVKSVEKAPKGLEGAKKEKQNKKEKKD 256


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 27.9 bits (59), Expect = 0.99
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -3

Query: 424 RISFTNTCSKLRIVSMSSLAEKMQVLVLGDSPSIDTDPPGSRRPPAISTSN 272
           + S     + L  V  S+L +  +VL L   P     P G R  PA++TSN
Sbjct: 69  KASIPTNINGLSQVKPSALEKSQEVLSLQKLPIKGRRPAGRRGRPALNTSN 119


>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 413 HEYLFKVAHCVHVFVGGENAS 351
           H  LF V+H V  FV GENA+
Sbjct: 65  HSGLFDVSHMVQWFVRGENAT 85


>SPBC2D10.07c |||mitochondrial inner membrane peptidase complex
           catalytic subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 446 VLQVFVPTHQFHEYLFKV 393
           V+Q+    HQ HEYLF+V
Sbjct: 11  VVQIAAFVHQIHEYLFQV 28


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 430 YRRISFTNTCSKLRIVSMSSLAEKMQVLVLGD 335
           Y+R    N C +L + S+S L +K Q  +L D
Sbjct: 119 YQRTRVENVCKRLGLKSLSFLWQKDQEKLLND 150


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 4/143 (2%)
 Frame = +3

Query: 108 IKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKFLDSAGSKLDYRRYGEVIFD--V 281
           + ++K+D  + Y   G  D LV     A   LDA    +D     + +  Y E I D  +
Sbjct: 376 LHSKKQDILKLYSDLGINDDLVVPFCEAASSLDA----IDDLNDYIHF-TYSEQIRDRAL 430

Query: 282 LIAGGLLLPGGSVSMDGESPKTNTCIFSANEDMDTMRNFEQVFVKLMRRYKYLEN--MFE 455
           L+  GL  P GS     E  + ++      E   + ++F    V    R +++E+  +  
Sbjct: 431 LMGTGLRRPQGSKYSFFEKFRKSSLYNLVKEFGMSAKDF-SFNVAQGARLRFVEDNTLSP 489

Query: 456 EEMKKVSVYLQGFEPQQRIKLAR 524
           EE+ +  V  +   P+Q ++ AR
Sbjct: 490 EELSRTYVTNELSSPEQVLQKAR 512


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +1

Query: 139 SMTLTGSATPLSRVWSARAVISTRLTNS*IRLARNSTTGAMARSYSM 279
           S+  T SAT  S   S+ A  ++  ++S    + NSTT A A S S+
Sbjct: 199 SLNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSI 245


>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 129 HLFFWSLSVDPIILVFLPSDSYNILLLTGY 40
           ++  WSL + P+I  F+PS  +  +   G+
Sbjct: 181 YVSLWSLILTPLIFFFVPSTPFIDMAFAGF 210


>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 69  SQKVEKPVLSGQRIKTRKRDE 131
           +Q++++PV  G  IK  K+DE
Sbjct: 496 AQEMDEPVTQGSNIKQEKQDE 516


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = -3

Query: 454 SNMFSRYLYRRISFTNTCSKLRIVSMSSLAE 362
           S  FSR+ Y    F NTC    +    S  E
Sbjct: 460 SKRFSRFYYGHYVFVNTCHNFFLTLYQSFTE 490


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +3

Query: 372 EDMDTMRNFEQVFVKLMRRYKYLENMFEEEMKKVSVYLQGF 494
           +D   +   E  F +  + Y+Y   M +EE+ K+    Q F
Sbjct: 175 KDEKKLYEAETAFEQSSQEYEYYNEMLKEELPKLFALAQSF 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,211,084
Number of Sequences: 5004
Number of extensions: 46191
Number of successful extensions: 165
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)