Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_F23
(528 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0007 - 12074472-12074538,12074908-12075116,12077202-120774... 83 2e-16
03_05_0253 + 22416981-22416993,22417458-22417639,22417965-224181... 31 0.57
07_03_1347 + 25932185-25932748,25933151-25933755,25935797-259362... 30 1.0
03_02_0205 + 6389343-6389609,6390418-6390486,6390662-6390757,639... 30 1.0
07_03_0634 + 20125242-20125688 29 2.3
05_01_0064 + 454786-455646,456537-456752 28 4.0
01_07_0339 + 42848065-42848943,42849308-42849526 28 4.0
01_06_0807 + 32125987-32126029,32126030-32126208,32126760-321269... 28 5.3
01_07_0280 + 42452993-42453337,42453778-42453981 27 7.1
01_06_0865 - 32567145-32568003,32568123-32568846,32569067-32569151 27 7.1
06_03_1455 + 30264023-30264174,30265930-30266070,30266328-302664... 27 9.3
06_01_0627 - 4567304-4567521,4567649-4567727,4567827-4568165,456... 27 9.3
03_05_0600 + 26021863-26022469,26022562-26022992 27 9.3
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 27 9.3
>11_04_0007 -
12074472-12074538,12074908-12075116,12077202-12077463,
12077547-12078043,12078651-12078719,12079258-12079363,
12080272-12080295,12081184-12081242,12081383-12081520
Length = 476
Score = 82.6 bits (195), Expect = 2e-16
Identities = 54/162 (33%), Positives = 80/162 (49%)
Frame = +3
Query: 36 LHNLSIAIYCMSQKVEKPVLSGQRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAY 215
L +L +++ C EKP L GQRIKTRKR+ DP F DA+VQ GDL+
Sbjct: 57 LSDLFVSLKCSK---EKPTLGGQRIKTRKRNIAAPLDPASFSDAIVQIYLDNAGDLELVA 113
Query: 216 KFLDSAGSKLDYRRYGEVIFDVLIAGGLLLPGGSVSMDGESPKTNTCIFSANEDMDTMRN 395
K ++S S L++ RYG+ F+V+ GG P G++ + E + + + +
Sbjct: 114 KSIES--SDLNFSRYGDTFFEVVFIGGRTQP-GTIKPEEEGERHPYSVLDCAAQREAILP 170
Query: 396 FEQVFVKLMRRYKYLENMFEEEMKKVSVYLQGFEPQQRIKLA 521
K +RR +L E M+K L+ FE +R KLA
Sbjct: 171 SVLYIQKTLRRRPFLIKNLENVMRKFLQSLEFFEENERKKLA 212
>03_05_0253 +
22416981-22416993,22417458-22417639,22417965-22418148,
22418241-22418315,22418481-22418590,22419411-22419629,
22419713-22419868,22419996-22420232
Length = 391
Score = 31.1 bits (67), Expect = 0.57
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 390 RNFEQVFVKLMRRYKYLENMFEEEMKKVSVYLQGFEPQQRIKLARM 527
+ FE FV+ + +Y Y E+ K +++Q F P I ++ M
Sbjct: 195 KKFEDKFVQTLLKYGYKGEYMSEDWLKQPLFIQSFAPSSLIYMSNM 240
>07_03_1347 +
25932185-25932748,25933151-25933755,25935797-25936214,
25936433-25936555,25936775-25936989,25937157-25937412,
25937844-25938149,25938764-25938820,25939635-25939685
Length = 864
Score = 30.3 bits (65), Expect = 1.0
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 129 EKEKYDPNGFRDALVQGLERAGGDLDAAYKFLDSAGSKLDYRRYGE-VIFD 278
EK+K DP GF D V A G ++ F S+G DY YGE V+FD
Sbjct: 62 EKDKDDPEGFYDHKVAA---ADGRMEGI--FWASSGLGWDYVYYGEVVVFD 107
>03_02_0205 +
6389343-6389609,6390418-6390486,6390662-6390757,
6391120-6391244,6391331-6391483,6392863-6392992,
6393122-6393282,6393660-6393702,6393869-6394042,
6394471-6394525,6394567-6394746,6396234-6396339,
6396448-6396506,6397419-6397541,6397825-6397919
Length = 611
Score = 30.3 bits (65), Expect = 1.0
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 102 QRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKFLDSAGSKLDYRRYGE 266
Q +KT R KY P+ +D G E ++ AAY+ L + Y R+GE
Sbjct: 77 QEVKTAYRTLARKYHPDMNKDP---GAEEKFKEISAAYEILSDEEKRSLYDRFGE 128
>07_03_0634 + 20125242-20125688
Length = 148
Score = 29.1 bits (62), Expect = 2.3
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +1
Query: 115 PEKEMRKRSMTLTGSATPLSR---VWSARAVISTRLTNS*IRLARNSTTGAMARSYSMCL 285
P + + R+M S LS V S RAV S T S + T + +S+ L
Sbjct: 24 PRRRVHWRNMRCANSVAYLSLSAFVMSGRAVASAAATAS-PPVGVQLTVTSEHSEWSI-L 81
Query: 286 SPAVSCCPVGRCRWTG 333
SP +C P G+ +W G
Sbjct: 82 SPRKTCHPTGKVKWKG 97
>05_01_0064 + 454786-455646,456537-456752
Length = 358
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/62 (24%), Positives = 31/62 (50%)
Frame = +3
Query: 297 LLLPGGSVSMDGESPKTNTCIFSANEDMDTMRNFEQVFVKLMRRYKYLENMFEEEMKKVS 476
L L GG+ G S + + + ED+ + ++F K + +Y+ FEE++++
Sbjct: 14 LCLCGGAACAAGRSGGEFSIVGYSEEDLASHDRLIELFEKWVAKYRKAYASFEEKVRRFE 73
Query: 477 VY 482
V+
Sbjct: 74 VF 75
>01_07_0339 + 42848065-42848943,42849308-42849526
Length = 365
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/62 (22%), Positives = 30/62 (48%)
Frame = +3
Query: 297 LLLPGGSVSMDGESPKTNTCIFSANEDMDTMRNFEQVFVKLMRRYKYLENMFEEEMKKVS 476
LLL G + P + + + ED+ + ++F K M +Y+ + EE++++
Sbjct: 15 LLLLCGGACVAVAMPSELSIVGYSEEDLASHERLMELFEKFMAKYRKAYSSLEEKLRRFE 74
Query: 477 VY 482
V+
Sbjct: 75 VF 76
>01_06_0807 +
32125987-32126029,32126030-32126208,32126760-32126943,
32127714-32127788,32128079-32128188,32128747-32128965,
32129124-32129279,32129759-32129911,32130223-32130349,
32131598-32131728,32131858-32132139
Length = 552
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = +3
Query: 381 DTMRNFEQVFVKLMRRYKYLENMFEEEMKKVSVYLQGFEPQQRIKLARM 527
D + FE FV + +Y Y E K +++Q F P + +++
Sbjct: 201 DGGKKFEDKFVDTLLKYGYKGQYMSENWLKQPLFIQSFAPTSLVHASKL 249
>01_07_0280 + 42452993-42453337,42453778-42453981
Length = 182
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 356 ASIGLGGFPVHRHRPTGQQETAGDKHIEYDLAIAP 252
A++G GG+ H HR +Q + G K +Y A P
Sbjct: 141 AAVGAGGYAYHEHREQ-KQASYGAKEQQYGYARMP 174
>01_06_0865 - 32567145-32568003,32568123-32568846,32569067-32569151
Length = 555
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +2
Query: 323 DGRGIPQDQYLHFLRQRRHGHNAQL*TGIRETDASVQIP 439
DG GIP + Y QRR L +R D Q+P
Sbjct: 480 DGLGIPSELYERMESQRRRHERVSLEVQVRLDDCCGQLP 518
>06_03_1455 +
30264023-30264174,30265930-30266070,30266328-30266430,
30266510-30266659,30267184-30267229,30267383-30267738
Length = 315
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 218 IPRFGWLETRLPALWRGHIRCAYRRRSPAAR 310
I RFG + P+ +RG+ + R RSPAAR
Sbjct: 45 ISRFGAWYSGSPSPYRGNPKSRSRSRSPAAR 75
>06_01_0627 -
4567304-4567521,4567649-4567727,4567827-4568165,
4568202-4568239,4568462-4568837
Length = 349
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 113 LYPLTR*YWFFYLLTHTIYCY*QVM*EPLTPFASS 9
L PLT+ WF ++ I+C Q++ PL+ S
Sbjct: 105 LKPLTKELWFATMILFPIHCLGQIIKSPLSKIVVS 139
>03_05_0600 + 26021863-26022469,26022562-26022992
Length = 345
Score = 27.1 bits (57), Expect = 9.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 331 PSIDTDPPGSRRPPA 287
PS+D +PPG PPA
Sbjct: 220 PSLDNEPPGGSTPPA 234
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +1
Query: 292 AVSCCPVGRCRWTGNPPRPILAFSPPTKT 378
A C P GR G PP P+ PP ++
Sbjct: 24 ASKCWPFGRGGGDGEPPPPLPPMEPPKRS 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,975,095
Number of Sequences: 37544
Number of extensions: 348338
Number of successful extensions: 1217
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -