Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F23
         (528 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20)                   132   1e-31
SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.78 
SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_44841| Best HMM Match : 7tm_1 (HMM E-Value=4.79999e-40)             29   3.1  
SB_14329| Best HMM Match : RRM_1 (HMM E-Value=3.5e-05)                 29   3.1  
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_29408| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_4026| Best HMM Match : MSSP (HMM E-Value=1.3)                       27   7.2  
SB_56651| Best HMM Match : DUF496 (HMM E-Value=8.5)                    27   9.6  
SB_9327| Best HMM Match : DUF1128 (HMM E-Value=9.5)                    27   9.6  
SB_8792| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.6  
SB_50357| Best HMM Match : Toxin_8 (HMM E-Value=2.4)                   27   9.6  

>SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20)
          Length = 457

 Score =  132 bits (320), Expect = 1e-31
 Identities = 68/137 (49%), Positives = 92/137 (67%), Gaps = 6/137 (4%)
 Frame = +3

Query: 129 EKEKYDPNGFRDALVQGLERA---GGDLDAAYKFLDSAGSKLDYRRYGEVIFDVLIAGGL 299
           EKEK+ P GFRDA++ GL      G DL+   KFLD++G KL+YR YGE +FDVL A   
Sbjct: 2   EKEKHHPLGFRDAIISGLNDLNDKGYDLEQVAKFLDTSGGKLNYRLYGEFLFDVLFAA-- 59

Query: 300 LLPGGSVSMDGESP---KTNTCIFSANEDMDTMRNFEQVFVKLMRRYKYLENMFEEEMKK 470
             PGGS+  DG +P   KTN CIF AN D +T+R   Q+  KL+ RY+YL+  +E+EM K
Sbjct: 60  --PGGSIVEDGPNPSTYKTNICIFEANNDNETLRKHVQMHNKLICRYRYLQKSYEDEMNK 117

Query: 471 VSVYLQGFEPQQRIKLA 521
           + ++L+GF  ++R KLA
Sbjct: 118 ILLFLKGFTDEEREKLA 134


>SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1130

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = -1

Query: 474 TPSSFLLRTC--SPGICTDASVSR-IPVQSCALCPCLRWRRKCKYWS 343
           T + ++L++C  S GIC D S S+  PV   +L PC    + C YW+
Sbjct: 811 TKAVYMLKSCKRSCGICEDPSGSKATPVGDPSL-PCEDKHKSCVYWA 856


>SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 795

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 331 PSIDTDPPGSRRPPAISTSNMTSP*R 254
           P  D  PP S+ PP +S S+ ++P R
Sbjct: 733 PPPDESPPSSKHPPTVSPSSSSAPPR 758


>SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
 Frame = +3

Query: 99  GQRIKTRKRDEK-----EKYDPNGFRDALVQGLER 188
           G++ K RK DEK     +K+DP+G    LV+ LER
Sbjct: 204 GEKDKGRKSDEKSEDGEKKFDPSGCDKDLVEALER 238


>SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = -3

Query: 463 ISSSNMFSRYLYRRISFTNTCSKLRIVSMSSLAEKMQVLVLGDSPSIDTDPPGSRRPPA 287
           +S   M   Y  +   +  + S+ R ++M++   ++QV      PSI + PP    PPA
Sbjct: 111 LSQIRMRQGYDQQDHEYQRSTSQDRHIAMTTRKAQVQVSASSSGPSIASQPPQPPAPPA 169


>SB_44841| Best HMM Match : 7tm_1 (HMM E-Value=4.79999e-40)
          Length = 1198

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +3

Query: 216 KFLDSAGSKLDYRRYGEVIFDVLIAGGLLLPG-GSVSMDGESPKTNTCIFSANEDMDTMR 392
           +F ++  S +DY  YGE I D  I   +     GS     ++  T++ +   +E  D   
Sbjct: 724 RFYENNSSSIDYNVYGETINDASIGAEMAKQSDGSADKHSKNATTDSHVAIESESPDVTE 783

Query: 393 N 395
           N
Sbjct: 784 N 784


>SB_14329| Best HMM Match : RRM_1 (HMM E-Value=3.5e-05)
          Length = 365

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
 Frame = +1

Query: 187 ARAVISTRLTNS*IRLARNSTTGAMARSYSMCLSPAVSCCPVG-RCRWTGNPPRPILAFS 363
           AR   STR     I      T G       +CL+ A  CCP+G  C W    P     F+
Sbjct: 41  AREKASTRCK---ITTDAGETRGTNRDDAGICLNFARGCCPLGFECSWIHEIPD--AKFN 95

Query: 364 PPTKTWTQCATLNRYS 411
              +T   C    R+S
Sbjct: 96  VKQETMRDCFFRERHS 111


>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4856

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -3

Query: 367  AEKMQVLVLGDSPSIDTDPPGSRRPPAISTSNM--TSP 260
            AEK++  VLG   S+D+ PP  R PP +   ++  TSP
Sbjct: 4561 AEKLEQKVLG--LSLDSSPPTKRPPPPVKPKSIKKTSP 4596


>SB_29408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 254 ALWRGHIRCA-YRRRSPAARWVGVDGRGIPQDQYLHFLRQRRHGHN 388
           A+W GH     Y   +  A W G   RG+ + QY+H   +  HGH+
Sbjct: 193 AVWYGHSTYTRYGTVTVHAVWCGHSTRGMIRSQYIH---EVWHGHS 235


>SB_4026| Best HMM Match : MSSP (HMM E-Value=1.3)
          Length = 109

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 372 EDMDTMRNFEQVFVKLMRRYKYLENMFEEEMKKV 473
           +DM  MR   Q++ K MRR + L  M  ++M+++
Sbjct: 68  KDMRRMRGLHQMWAKDMRRMRSLPQMRAKDMRRM 101


>SB_56651| Best HMM Match : DUF496 (HMM E-Value=8.5)
          Length = 114

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
 Frame = -2

Query: 455 FEHVLQVFVPTHQFHEYLFKVAHCVHVFVGGENASIGLGGFPVHRHRP-TGQQETAGDKH 279
           F H+    VPT QF++Y  +++  + + +GG    +  G     +  P  G   T  +K 
Sbjct: 12  FAHIKSTEVPTVQFNQYWVEISDAL-ISLGG----VSQGEIDTLKVTPLEGDYVTLLNKW 66

Query: 278 IEYDLAIAPVVEFRASRI*EFVSRVEITARALQTLDKGVAE 156
           ++ DL ++  V      + E  ++V+ T + +  +   V E
Sbjct: 67  VDRDLDLSKEVNETKKEVKETKTKVDETNKEVHEVKGKVDE 107


>SB_9327| Best HMM Match : DUF1128 (HMM E-Value=9.5)
          Length = 287

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = -3

Query: 478 TDTFFISSSNMFSRYLYRRISFTNTCSKLRIVSMSSL---AEKMQVLVLGDSPSIDTDPP 308
           TDT  + +S  +   +   ISF+ T      ++  +L   AEK  + V+  S S ++DP 
Sbjct: 170 TDTSLLQTSRYYGHLVITDISFSRTPRYYEYLTKENLIEEAEKYNITVIA-SESFNSDPT 228

Query: 307 GS 302
            S
Sbjct: 229 NS 230


>SB_8792| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1045

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = +2

Query: 260 WRGHIRCAYRRRSPAARWVGVDGRGIPQDQYL-HFLRQ 370
           W     C  +R    A W+G   +G+    YL H LRQ
Sbjct: 350 WTSSTSCPDKRHLMEALWLGCGAQGMKTQVYLHHVLRQ 387


>SB_50357| Best HMM Match : Toxin_8 (HMM E-Value=2.4)
          Length = 304

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 261 GEVIFDVLIAGGLLLPGGSVSMDGESPKTNT 353
           GEV F    +G +  PGGSV ++G S +  T
Sbjct: 222 GEVSFPQSYSGSVESPGGSVEINGFSARQKT 252


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,778,811
Number of Sequences: 59808
Number of extensions: 367460
Number of successful extensions: 1215
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)