Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_F22
(619 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0) 99 5e-34
SB_28440| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_53959| Best HMM Match : 7tm_1 (HMM E-Value=0.016) 31 0.99
SB_40632| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_31376| Best HMM Match : CLN3 (HMM E-Value=5.5e-06) 29 2.3
SB_23058| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_1104| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_56096| Best HMM Match : fn3 (HMM E-Value=1.3e-24) 27 9.2
SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3) 27 9.2
SB_35937| Best HMM Match : LRR_1 (HMM E-Value=7.1e-09) 27 9.2
>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
Length = 157
Score = 99 bits (238), Expect(2) = 5e-34
Identities = 47/70 (67%), Positives = 60/70 (85%)
Frame = +2
Query: 167 QEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTR 346
+EI++ KK+III+VP+P+++AFQKIQ RLVRELEKKFSGKHVV V R+ILP+P+ K+R
Sbjct: 52 KEIDVGGKKAIIIFVPVPQIRAFQKIQTRLVRELEKKFSGKHVVIVAQRRILPRPTRKSR 111
Query: 347 VANKQKRPRS 376
KQKRPRS
Sbjct: 112 -NQKQKRPRS 120
Score = 62.5 bits (145), Expect(2) = 5e-34
Identities = 25/34 (73%), Positives = 31/34 (91%)
Frame = +2
Query: 488 HLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 589
HLDK QQTTI+HK++TF +VYKKLTG++V FEFP
Sbjct: 121 HLDKTQQTTIDHKLETFSTVYKKLTGKDVVFEFP 154
Score = 58.8 bits (136), Expect = 3e-09
Identities = 32/78 (41%), Positives = 47/78 (60%)
Frame = +3
Query: 24 VFKMSTKILKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKKLNFITKNQLS 203
+F S KI+K + FE ISQA++ELE NSD+KAQLRELYI+ AK+++ K +
Sbjct: 4 MFTASAKIVKPQGETANEFEQGISQAILELEMNSDMKAQLRELYISSAKEIDVGGKKAII 63
Query: 204 FMCRCPN*RHSKRSKSGL 257
P R ++ ++ L
Sbjct: 64 IFVPVPQIRAFQKIQTRL 81
>SB_28440| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 33.1 bits (72), Expect = 0.19
Identities = 18/81 (22%), Positives = 40/81 (49%)
Frame = -2
Query: 585 NSKVTSRPVNFLYTDWKVSTLCSIVVCWFLSRCTLMSCEPSSFTLMRLPTISAGNTRSSN 406
++++ + + ++T + T ++V C + C + S T++ +P TRS N
Sbjct: 34 SNEIVAVTLTTIFTCVTIVTCATVVTCVTVITCVTVIAYVSGLTVLLMPV-----TRSRN 88
Query: 405 MASYTEVSVLERGLFCLLATR 343
M+ + + +L RGLF + +
Sbjct: 89 MSRVSVLRLLSRGLFLTITNQ 109
>SB_53959| Best HMM Match : 7tm_1 (HMM E-Value=0.016)
Length = 185
Score = 30.7 bits (66), Expect = 0.99
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 371 GAFSVCWLHVSCGWAWAGSYGH 306
GAF VCWL S G +W + GH
Sbjct: 105 GAFVVCWLPYSIGTSWKLATGH 126
>SB_40632| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 776
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 228 RHSKRSKSGLSVS*KRSSAVSMLCS 302
RH RS+S L + K+S AV++LCS
Sbjct: 574 RHRSRSRSRLEIVSKKSPAVNVLCS 598
>SB_31376| Best HMM Match : CLN3 (HMM E-Value=5.5e-06)
Length = 416
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Frame = -2
Query: 606 IYK*GSGNSKVTSRPVNFLYTD-WKVSTLCSIVVC-------WFLSRCTLMSCEPSSFTL 451
+Y+ G+G + N +YT WKV+++CSI C W L + L E S++
Sbjct: 128 VYRTGAGAGGLA---FNLIYTGKWKVASICSIPFCCLPLLSYWLLDKRPLQ--ESDSYSG 182
Query: 450 MRLPTISAGNTRSSNMAS 397
++ + ++++N++S
Sbjct: 183 VKYTKVDEKESQNNNLSS 200
>SB_23058| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 554
Score = 28.3 bits (60), Expect = 5.3
Identities = 23/76 (30%), Positives = 33/76 (43%)
Frame = -1
Query: 586 ELESHFAPRQLLVYRLEGVNLVFNSCLLVFV*MHFDEL*AIELHSDAFANNLGREYQIFQ 407
E E F + LVY +GV+ VF L + + F AI L A LG +++
Sbjct: 158 EKEPKFNAKSSLVYDPDGVHQVFLVLLFLTIIGEFFSAPAITLADSATLGVLGENKELYG 217
Query: 406 YGVIYRSQCPGTGPFL 359
++ S GT FL
Sbjct: 218 RQRLWGSLGWGTAMFL 233
>SB_1104| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -2
Query: 525 LCSIVVCWFLSRCTLMSCE--PSSFTLMRLPTISAGNTRSSN 406
+CS V+ W L ++SC+ P + R+P+IS N R N
Sbjct: 41 ICSAVIAWSLIIVLVVSCKWHPVGIS-KRIPSISCDNKRCFN 81
>SB_56096| Best HMM Match : fn3 (HMM E-Value=1.3e-24)
Length = 1065
Score = 27.5 bits (58), Expect = 9.2
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Frame = -2
Query: 498 LSRCTLMSCEPSSFTLMRLPTISA----GNTRSSNMASYTEVSVLERGLF--CLLATRVL 337
LSR + C+PSS +R+ ++A GN+ SN+ + E+ L + R L
Sbjct: 868 LSRKVTVHCQPSSVYRVRILALTADPTIGNSEPSNLLTICTPGSPEKSLVPKQQIRLRSL 927
Query: 336 WLGLGRI 316
W G RI
Sbjct: 928 WTGNERI 934
>SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3)
Length = 151
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/26 (42%), Positives = 21/26 (80%)
Frame = +2
Query: 209 VPMPKLKAFQKIQIRLVRELEKKFSG 286
VP+P++ A QK++ +L R++E+K +G
Sbjct: 69 VPLPQVSAMQKVKGKL-RDMEQKLNG 93
>SB_35937| Best HMM Match : LRR_1 (HMM E-Value=7.1e-09)
Length = 224
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = -2
Query: 399 SYTEVSVLERGLFCLLATRVLWLGLGRILRSPTNTTCLPLNFFSNSRTSLIWIFW 235
SY +S + + L A R L L ++ P +T LPL +F S + +FW
Sbjct: 60 SYNRLSFIPADIGKLRALRELNLEGNQLGAMPISTLFLPLKYFRISNNFIHPLFW 114
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,182,358
Number of Sequences: 59808
Number of extensions: 436621
Number of successful extensions: 1396
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1392
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -