Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F22
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...   194   3e-50
AC024214-8|AAF36070.2|  296|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z77652-2|CAB01113.1|  665|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U39848-6|AAL11100.1|  317|Caenorhabditis elegans Not-like (yeast...    28   4.6  
U39848-5|AAL11099.1|  367|Caenorhabditis elegans Not-like (yeast...    28   4.6  
U39848-4|AAA80691.1|  444|Caenorhabditis elegans Not-like (yeast...    28   4.6  
U70849-11|AAK29800.1|  897|Caenorhabditis elegans Hypothetical p...    28   6.1  
U70849-10|AAK29799.1|  910|Caenorhabditis elegans Hypothetical p...    28   6.1  
U50197-7|AAM54189.1|  796|Caenorhabditis elegans Abnormal dauer ...    27   8.1  
U50197-6|AAK68348.1|  892|Caenorhabditis elegans Abnormal dauer ...    27   8.1  
U50197-5|AAM54188.1|  864|Caenorhabditis elegans Abnormal dauer ...    27   8.1  
AF005205-1|AAB61748.1|  796|Caenorhabditis elegans DAF-3 protein.      27   8.1  

>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score =  194 bits (474), Expect = 3e-50
 Identities = 89/144 (61%), Positives = 117/144 (81%), Gaps = 1/144 (0%)
 Frame = +2

Query: 167 QEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTR 346
           +E+EL NK +IIIYVP+P+LKAF KI   LVRELEKKF G+ ++ +  R+ILPKP   ++
Sbjct: 49  KEVELGNKSAIIIYVPVPQLKAFHKIHPALVRELEKKFGGRDILILAKRRILPKPQRGSK 108

Query: 347 VA-NKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEH 523
               KQKRPRSRTLT+V+DA L++LV+PAE+VG+RIRVKLDG ++ KVHLDK+ QT + H
Sbjct: 109 ARPQKQKRPRSRTLTAVHDAWLDELVYPAEVVGRRIRVKLDGKKVYKVHLDKSHQTNVGH 168

Query: 524 KVDTFQSVYKKLTGREVTFEFPEP 595
           K+  F SVY+KLTG++VTFEFP+P
Sbjct: 169 KIGVFASVYRKLTGKDVTFEFPDP 192



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 21/53 (39%), Positives = 34/53 (64%)
 Frame = +3

Query: 42  KILKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKKLNFITKNQL 200
           K+LK+        E  +SQAL++LETN D+++QL+ELYI   K++    K+ +
Sbjct: 7   KLLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAI 59


>AC024214-8|AAF36070.2|  296|Caenorhabditis elegans Hypothetical
           protein Y77E11A.9 protein.
          Length = 296

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 425 GIPDLPIWRHIQKSVSWNGAFSVCWLHVSCGWAW 324
           GIP+      +  S++W+G  + C+   +C  AW
Sbjct: 5   GIPNTTNNTQVNTSLTWDGCLTACFYSPACVMAW 38


>Z77652-2|CAB01113.1|  665|Caenorhabditis elegans Hypothetical
           protein C06B3.2 protein.
          Length = 665

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 368 AFSVCWLHVSCGWAWAGSYGH 306
           A SV W+ +SC + WAG  G+
Sbjct: 572 ALSVLWIILSCHYGWAGPIGN 592


>U39848-6|AAL11100.1|  317|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 2, isoform c protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 439 WQTHQSEARWLTTHQSASRQKPTDNY 516
           W+ H+SE  WLT  Q    ++ T NY
Sbjct: 171 WRFHKSEQVWLTRSQYGGVKEQTGNY 196


>U39848-5|AAL11099.1|  367|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 2, isoform b protein.
          Length = 367

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 439 WQTHQSEARWLTTHQSASRQKPTDNY 516
           W+ H+SE  WLT  Q    ++ T NY
Sbjct: 221 WRFHKSEQVWLTRSQYGGVKEQTGNY 246


>U39848-4|AAA80691.1|  444|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 2, isoform a protein.
          Length = 444

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 439 WQTHQSEARWLTTHQSASRQKPTDNY 516
           W+ H+SE  WLT  Q    ++ T NY
Sbjct: 298 WRFHKSEQVWLTRSQYGGVKEQTGNY 323


>U70849-11|AAK29800.1|  897|Caenorhabditis elegans Hypothetical
           protein F29B9.2b protein.
          Length = 897

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 455 VKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEF 586
           VK+ GS      +D   Q+T   K+DTF+ +++    R + + F
Sbjct: 379 VKIMGSDYEVDTIDVYNQSTYSMKLDTFRKLFRDTKNRPLLYNF 422


>U70849-10|AAK29799.1|  910|Caenorhabditis elegans Hypothetical
           protein F29B9.2a protein.
          Length = 910

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 455 VKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEF 586
           VK+ GS      +D   Q+T   K+DTF+ +++    R + + F
Sbjct: 392 VKIMGSDYEVDTIDVYNQSTYSMKLDTFRKLFRDTKNRPLLYNF 435


>U50197-7|AAM54189.1|  796|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform c protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -3

Query: 431 RPGIPDLPIWRHIQKSVSWNGAFSVCWLHVSC 336
           RP I D P+W  ++ +++++   S+C    +C
Sbjct: 746 RPSIHDCPVWIELKINIAYDFMDSICQYITNC 777


>U50197-6|AAK68348.1|  892|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform a protein.
          Length = 892

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -3

Query: 431 RPGIPDLPIWRHIQKSVSWNGAFSVCWLHVSC 336
           RP I D P+W  ++ +++++   S+C    +C
Sbjct: 842 RPSIHDCPVWIELKINIAYDFMDSICQYITNC 873


>U50197-5|AAM54188.1|  864|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform b protein.
          Length = 864

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -3

Query: 431 RPGIPDLPIWRHIQKSVSWNGAFSVCWLHVSC 336
           RP I D P+W  ++ +++++   S+C    +C
Sbjct: 814 RPSIHDCPVWIELKINIAYDFMDSICQYITNC 845


>AF005205-1|AAB61748.1|  796|Caenorhabditis elegans DAF-3 protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -3

Query: 431 RPGIPDLPIWRHIQKSVSWNGAFSVCWLHVSC 336
           RP I D P+W  ++ +++++   S+C    +C
Sbjct: 746 RPSIHDCPVWIELKINIAYDFMDSICQYITNC 777


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,947,189
Number of Sequences: 27780
Number of extensions: 325415
Number of successful extensions: 888
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)