Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F21
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    28   1.1  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    27   1.5  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    27   1.9  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   2.5  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     26   4.4  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    26   4.4  
SPBC1105.16c |rpr2||RNase P subunit Rpr2 |Schizosaccharomyces po...    25   5.9  
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    25   5.9  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    25   7.7  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   7.7  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    25   7.7  
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    25   7.7  

>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 20/57 (35%), Positives = 29/57 (50%)
 Frame = +2

Query: 356 HTSTDIVTRKNMKRIVFRSLNIYAEINVKTRVKYVLRDLSLLKFILHSCSVCISDCV 526
           H S D++ R+ +  +  R         V  + K ++ DLS LKF+L S  VC  DCV
Sbjct: 253 HRSFDVIVRRQLDSVWHR---------VSPKTKQLVGDLSTLKFLL-SALVCY-DCV 298


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -2

Query: 177 YICNGRI-CKLKPGVVPKGCNGMC 109
           Y+C+G + C +  GV  + CNG C
Sbjct: 802 YVCDGTVLCPIVNGVSYQNCNGAC 825


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
 Frame = +2

Query: 329 GFRGDVVPNHTSTDIV-------TRKNMKRIVFRSLNIYAEINVKTRVKYVLRDLSLLKF 487
           GF G V+  H  + +V       T +  +R + RSL  +    VKT + +VLR L    F
Sbjct: 410 GFAGSVITPHYDSMLVKCTCHDATYEYTRRKMIRSLIEFRVRGVKTNIPFVLRLLMHDTF 469

Query: 488 ILHSC 502
           I  +C
Sbjct: 470 IQGNC 474


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 309 RPSDDKI-FDLERHRRFAFDNTKGRKQPTTHRPLQSM 202
           +P DD + FD ER +   FD+ + R+ P  H P + M
Sbjct: 172 KPEDDSVFFDDERPKHHEFDD-EDREFPAHHEPGEHM 207


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/43 (23%), Positives = 25/43 (58%)
 Frame = -2

Query: 489 INFNNDKSRNTYFTRVFTFISAYIFKERNTMRFIFFLVTISVL 361
           +   N+  +N+Y  R+F  +S+  F   N++ F +F++ + ++
Sbjct: 208 LTHENNNKKNSYVFRLFDRVSSSTFYFFNSL-FAYFIILLRII 249


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 315 INRPSDDKIFDLERHRRFAFD 253
           +NRPSDD    L+   R+ F+
Sbjct: 469 LNRPSDDNYLKLDNTERYTFE 489


>SPBC1105.16c |rpr2||RNase P subunit Rpr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 107

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/44 (27%), Positives = 17/44 (38%)
 Frame = -2

Query: 537 VCHPTQSLIHTEQECKINFNNDKSRNTYFTRVFTFISAYIFKER 406
           +C    SL+   + C I F     +N    RV        FK+R
Sbjct: 58  ICKGCNSLLVPGKSCSIRFEEPSRKNPSIDRVLWICKKCAFKKR 101


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +2

Query: 305 GRLM--CLL*GFRGDVVPNHTSTDIVTRKNMKRIVF 406
           GR M  CLL  +RGDV+P      + T K  + I F
Sbjct: 310 GRYMATCLL--YRGDVIPRDVQAAVTTIKAKRTIQF 343


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 368 DIVTRKNMKRIVFRSLNIYAEINVKTRVKYVLRDLSL 478
           DIV+R + + ++  + N+   I + T  KYVL   S+
Sbjct: 390 DIVSRTSWEEVIRMNTNVSGGIFMSTCYKYVLGKYSI 426


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 561  FDALRLNFVCHPTQSLIHTEQECKI 487
            FD+L+   V HPTQ   +T+Q  ++
Sbjct: 1026 FDSLKTKNVVHPTQLRRNTQQSAQL 1050


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 279 ERHRRFAFDNTKGRKQPTTHRPLQSMESNLRKGE 178
           +R R F  ++T   +     RP +S +S  RKG+
Sbjct: 67  QRKRTFPLNDTHSSRARQHERPFRSRKSRRRKGK 100


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 305 GRLM--CLL*GFRGDVVPNHTSTDIVTRKNMKRIVF 406
           GR M  CLL  +RGDV+P      + + K+ + I F
Sbjct: 314 GRYMATCLL--YRGDVIPRDVQAAVTSIKSRRTIQF 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,477,443
Number of Sequences: 5004
Number of extensions: 53905
Number of successful extensions: 150
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)