Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F21
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0036 - 9950353-9950379,9950753-9950791,9951021-9951194,995...    29   2.6  
03_02_0712 - 10600147-10600196,10600257-10600378,10600993-106014...    28   4.5  
06_03_1159 + 28084786-28085428,28085520-28086166                       28   6.0  
09_04_0377 + 17086775-17088310                                         27   7.9  

>04_03_0036 -
           9950353-9950379,9950753-9950791,9951021-9951194,
           9951287-9951415,9951782-9952012,9952655-9952732,
           9953035-9953055,9953790-9953855,9953935-9954015,
           9954148-9954920,9955461-9955654,9956723-9956817,
           9958190-9958219,9958334-9958453,9959185-9959262,
           9959428-9959505,9960459-9960488,9960614-9960739,
           9961239-9961379,9963416-9963532,9963619-9963670,
           9963759-9963890,9964668-9964720,9964816-9964911,
           9965255-9965260,9965416-9965561,9966494-9966629,
           9966885-9967038,9968017-9968154,9968268-9968614
          Length = 1295

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +1

Query: 280 KIEYLVI*GAVNVPPLR---IQRRCSAEPHKHGYCDEEKYETHRVPFFEYI 423
           KI Y+V    +NV PL+      R +A+P+  G   +  YE +  P F+ +
Sbjct: 507 KISYIVRDALINVGPLKDFSYGLRANADPNAMGNAKQSNYELYGKPRFQIL 557


>03_02_0712 -
           10600147-10600196,10600257-10600378,10600993-10601489,
           10601663-10601851,10601936-10602099,10602193-10602446,
           10602535-10602691,10602830-10602995,10603121-10603227,
           10603305-10603478,10603594-10603689,10603781-10603862,
           10603948-10604058,10604253-10604309,10604638-10604709,
           10604799-10605041,10605195-10605341,10605381-10605616,
           10605745-10605865
          Length = 1014

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 192 LRKGEYICNGRICKLKPGVVPKGC 121
           LR G+ +C G + ++ PG VPK C
Sbjct: 76  LRNGQILC-GALNRVHPGAVPKAC 98


>06_03_1159 + 28084786-28085428,28085520-28086166
          Length = 429

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = +3

Query: 102 HAGTCRCSLWARRRASVCKSFHCICTRLFLGLTPLTARVCELSAVFVPLCCRRRNACVFQ 281
           HA T  CSL A   +++C S  C   R+       T  + +   VF     +R   C+  
Sbjct: 294 HATTLACSLGAGDSSTLCTSGSCSVCRIIRHGFSATREIKDGVGVFTTSTSKRALECIAG 353

Query: 282 D 284
           D
Sbjct: 354 D 354


>09_04_0377 + 17086775-17088310
          Length = 511

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -1

Query: 277 KTQAFRLRQHKGTKTADNSQTLAVNGVKPKKRRVHMQWKDLQTEARR 137
           +  A R+R+     +A++ + LA+   + K +R H    DLQ   +R
Sbjct: 447 RMNAIRIRKENQVYSAEDKRALAMFNYEEKSKREHKVMADLQRLVQR 493


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,542,770
Number of Sequences: 37544
Number of extensions: 336881
Number of successful extensions: 850
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)