Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_F21
         (568 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC126459-1|AAI26460.1|  257|Homo sapiens chromosome 10 open read...    33   0.93 
AL121928-10|CAI12523.1|  257|Homo sapiens novel protein protein.       33   0.93 
AK024342-1|BAB14892.1|  257|Homo sapiens protein ( Homo sapiens ...    33   0.93 
AY140955-1|AAN46669.1| 1079|Homo sapiens G-protein coupled recep...    31   2.1  
AC010896-3|AAY14645.1| 1079|Homo sapiens unknown protein.              31   2.1  

>BC126459-1|AAI26460.1|  257|Homo sapiens chromosome 10 open reading
           frame 95 protein.
          Length = 257

 Score = 32.7 bits (71), Expect = 0.93
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +3

Query: 111 TCRCSLWARRRASVCKSFHCICTRLFLGLT-PLTARVCELSAVFVPLCCRRRNAC 272
           +C  + W+ R A +C S+   C       T P  A  C   +     CCRRR AC
Sbjct: 167 SCAGAAWSARGAPLC-SYRTSCAGSCGARTAPTPAPTCASPSAAASSCCRRRRAC 220


>AL121928-10|CAI12523.1|  257|Homo sapiens novel protein protein.
          Length = 257

 Score = 32.7 bits (71), Expect = 0.93
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +3

Query: 111 TCRCSLWARRRASVCKSFHCICTRLFLGLT-PLTARVCELSAVFVPLCCRRRNAC 272
           +C  + W+ R A +C S+   C       T P  A  C   +     CCRRR AC
Sbjct: 167 SCAGAAWSARGAPLC-SYRTSCAGSCGARTAPTPAPTCASPSAAASSCCRRRRAC 220


>AK024342-1|BAB14892.1|  257|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14280 fis, clone PLACE1005584, weakly similar to
           TRANS-ACTING TRANSCRIPTIONAL PROTEIN ICP0. ).
          Length = 257

 Score = 32.7 bits (71), Expect = 0.93
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +3

Query: 111 TCRCSLWARRRASVCKSFHCICTRLFLGLT-PLTARVCELSAVFVPLCCRRRNAC 272
           +C  + W+ R A +C S+   C       T P  A  C   +     CCRRR AC
Sbjct: 167 SCAGAAWSARGAPLC-SYRTSCAGSCGARTAPTPAPTCASPSAAASSCCRRRRAC 220


>AY140955-1|AAN46669.1| 1079|Homo sapiens G-protein coupled receptor
           GPR113 protein.
          Length = 1079

 Score = 31.5 bits (68), Expect = 2.1
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -1

Query: 244 GTKTADNSQTLAVNGVKPKKRRVHMQWKDLQTEARRRAQRLQRHVPAC 101
           G+  A  SQ ++  GV+P++     QW  L    +   +R+ R  PAC
Sbjct: 19  GSPVAQASQPVSETGVRPREGLQRRQWGPLIGRDKAWNERIDRPFPAC 66


>AC010896-3|AAY14645.1| 1079|Homo sapiens unknown protein.
          Length = 1079

 Score = 31.5 bits (68), Expect = 2.1
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -1

Query: 244 GTKTADNSQTLAVNGVKPKKRRVHMQWKDLQTEARRRAQRLQRHVPAC 101
           G+  A  SQ ++  GV+P++     QW  L    +   +R+ R  PAC
Sbjct: 19  GSPVAQASQPVSETGVRPREGLQRRQWGPLIGRDKAWNERIDRPFPAC 66


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,074,335
Number of Sequences: 237096
Number of extensions: 1905031
Number of successful extensions: 7845
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7845
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5759818212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)